BO33751.complete Sequence
3679 bp assembled on 2013-01-24
GenBank Submission: KX796425
> BO33751.complete
GAAGTTATCAGTCGACATGGAAACCGTGGTTGCCTTCAACAATGAGCTCT
CCGGACTCTATGACAGCCGACCGCCCATTTCCAAAGCGAAGATGGCCGCC
ATCACCAAGTCGGCGATGCGGGCCATCAAGCTGTATAAGCACGTCGTCCA
GAGTGTGGAGAAGTTCATCTTGAAGTGCAAGCCGGAGTACAAAGTACCCG
GGCTGTATGTAATCGACTCGATAGTGCGCCAGTCGCGCCACCAGTACGGT
ATGGACAAGGATCTGTTCGCGCCCCGATTCCAGCGTAATCTCACGGAGAC
CTTTGCCAACTTGTTCCGGTGCGCTCCGGAGGACAAGAGTCGCATCATCC
GGGTACTGAACCTGTGGCAGAAAAACAACGTCTTCAAGTCCGAGGTCATT
CAGCCGATCTTCGACCTGGCCGACCCAAACCACCCAATCTACCACCAGAT
GCCTCCGGTGGGTGGCAGTGGAGGACAGGGCGGCGGCGTGGGTCCAGGAC
CCAGCAGCAGCGGTGCTCTTAGCCTGGCGGACATATCGAGCGGTCCGAAC
GGTCTAAACAGCTCCGGAATGGAGATAAGCATGAACAGCTCCGGGGGCGA
CGATAAGATGGGCGGTGCCATGCCCGACTTGTCGGAGAAGAAGATCAAGC
AGCTGCTAAACAATCCGAATGTGCTGCGGCAGCTCCATACGCTGCAGAAC
TTCCAAAATTTGAAGCCGCAGGAGGAGAACCAGAAGCATCGCTATCAGGA
CGAGGCACTGCAGCAGCATTTCCAGAACGTAATGAAGGGAAATGCTGGTA
TGCCGCCGGGCATGGGCATGGGCATGAACATGAACGACAGCATGGACCTT
AACAAGGATGTCGAGTTCATATCGGAGCAACAGACCATAGAGGTGATCAA
TCTGGATGGTGGCGATTCCCGCAGCCCGACGCCCGACCGTGATCGCTACA
AGCGCAGTCGCCGGAACAGTCGCAGCCGGACGAGATCTCCGCGAGGACGT
GGCGCCGGAGGAGGCACGGGCAACGATCGACGTCGGCGTGGCACTCGTTC
CCGATCGCGCAGCCGATCACCACGGTCCAGCCGGCGACGCGGATCAAGGG
ACCGGGATCGCATGGATCGTAGCAATCGAGACAAGGAACGCGATCGGGAA
CACGAGCGTGAGCGGCGCAAGAAGGGATTGCCCGACATCAAAAAGGAGCA
TCTCAGTGTATGCAGCACTACGCTGTGGGTGGGCCACCTGTCTAAGCTTG
TTTACCAGGAGGAGCTGTCCGATACCTTTGGCGAATATGGCGATATAGTG
AGCATCGATCAGATTGTGCCGCGTGGATGCGCTTTTATTGTAATGAACCG
ACGCCAAGACGCCCACAAGGCGATGCAAGCTCTGAAGAACCACAAGCTGC
AGGGACGAGCCATCACCATTTCATGGGCCGCCGGCAAGGGTGTGAAAAGC
AAGGAGTGGAAGGACTACTGGGACCTCGAATTGGGTGTTACTTACATTCC
TTGGTCCAAACTCAGTTCGGATACGGACTTCGACGCGCTGGAGGAGGGTG
GTATGTTCGACGAAGATACTATGCCCATCCAAATGAAGCAGAAGATTAAC
CAGGCCAAGAATGCTGCCAAGGAGCACAAGGGTGCATCCATTGCGGAGGC
AGCTGGTGCGCCAAGTGTTGGTGTTCCACCGCCAAATCTGATATTTGGTA
TCGATACAACCCAACCACCACCGGTTGGTCCAGTCGGCCCAGTGGGTCCT
CCACCGGGTCCGGGAGCCCCACCTCCGGGGCTCATGGGTATGGTAAGGGG
ACAATTTCCGATGGCCCCACCCATGGGCATTAATATGCCACCGCCCATAA
TGATGCCGCCAACAAATATGCCGCCACCGATGATGATGCCAACGACCAAC
ATGCCTCCTCCAATGATGATGCCACCGACAATGATGCCTCCTGGCTTTCC
AGGCATTGGGGGACCACCACATCCTATGGCCTTGCCACCGGGAGCTCCAT
TTCCTCCGCCTGGAGCTGTGCCGCCACCCATACCGAGCGGTGGGCAGATT
AGCAATAGTGGCAACGTGAGCGATGATCAAATGGACATTGAAATGGACCT
GGAAGACGCCCCACCTCTGCCGCCGCAACAGCAAGCCAACTTTAATCCGT
CGCCCAGCAATGTGGACCTATCGCCGGCGGCCATGGCCAACGAGATGTTC
CAGCAGCGGGACAGGGAGCGCGATCGGGATAATAGGGATCGCTCCAGGGG
ACCGGGCAACTCGCGCTGGGGCGGACGAGATGATGTCGTTGAAGCGGCAG
AACGCTGGCGCGCCGAAAATGGAGGAGGTGGTGGTGGTCCGGGATCTGGA
CTCGGACCGAACGCAGCCTTTAACGAGGCACGAGCGCGTCTGAACCTTAA
TCCCATTGAGCACGGTATGCCAAGACCGGACTTTATGGACTTTGATAATC
GCGGTGGACCGGGTGGACCACGAGGAATGGGACCGCGTGGAAACCATAAC
GGTGGAGGCCCCGGAGGCGACTTTTTCCCGCCCAACATGAATCACAATCG
GTTCAATCAGCCCACCAGCTTGATGCAGATGCGCATCCCGCCGCCGGCTT
CTTTCAACCAGCGCATGGGTGGACCAGCTGGTAACGGTGGCAACGGCGTT
GGGCCCATGTTTATGCGCAACCAAGGAGGTGGGCCAGGTGGTGCTGGACC
CAGCGGTGGTGGACCCGGCGGTGCTGGAACCGGCGGCGGTGGTCCGGGCG
GACGTCAGCAGGGACCAGGTTTCTTTAATCCTCGGAATCCCTTCAATGAC
AACCAACGAGGACGTGGAGGTCAAAGTGGAGGCGGTGTTCGCGGCGTGGG
CGGAGGAGGAGGTGGCGGTCCTGGAGGTCGCGGACGTTGGAGCGACGATG
AGGACGAGGGCGGAAACAACTTCAAGCGGCGTGGTGGTCCCGGTGGGCCA
GGCGGTAATAGATTCCGTGGCGAGCGTGGAGGCGAAATGATGGACGACCG
TCGTGGCAACAATTCACGGGGCGGACGCGGAGGACCGCGAGAGGATCGTG
AACGTCCGGGATTCGGAAACAGGCGGGGATCGCGAGATGACAGCAACCGC
CACTCAATAAGTTCGACGGATGAAGGCAACAAGGCGGCTTCGGAGACGGA
ACCCAAGCCCAAAAACGTTGAAACCGAATTAGGTAGCACCAACACCGGTG
CGCCGGCTGCGGCCACTAGAGTGGACACCGAGGAGGATTGGGATCAGGAA
CTTCAAGACTATGAGGCGAGAATGGAGGCCCAGAAGCCAGGCGAACGAGC
ATCTCAGTCTGCTAACAGTCCTCCGCAAGAAAAGCTGCCGGCGGAGAATG
AAAACTTCGCAAAGCCAGCCGACGTGACCGGCGATCCTTTGGTTGCGAAA
TCACAAACAGAAACTTCAGCCGCCTGCACGCCCCTTTATGACGAGCTGCC
ACCGCCAGCAGTTCCACAGACTCCAACTCAGCCCCCGAAAGAACCTCAAG
GTTCTCCGCCCCGGCCGGCGCCGCCAGTCATTGAAACCGAGGCTGCGCCC
CATGAGGAATCGGTTCCAGCGCCGCCGGCTGAACTCCAAACGGAGGCTCC
ATCCGCGGAGGAACCCATAGCCCCTGCTGCTTCCGCCGATGTCGTAGCCG
AAGCTGATCCTGCAAGCTTTCTAGACCAT
BO33751.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:13:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4266-RA | 3648 | CG4266-PA | 1..3645 | 17..3661 | 18225 | 100 | Plus |
| CG4266-RD | 3639 | CG4266-PD | 1..3636 | 17..3661 | 18055 | 99.8 | Plus |
| CG4266-RB | 3921 | CG4266-PB | 892..3918 | 635..3661 | 15135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4266-RA | 4389 | CG4266-RA | 197..3843 | 15..3661 | 18235 | 100 | Plus |
| CG4266-RD | 4380 | CG4266-RD | 197..3834 | 15..3661 | 18065 | 99.8 | Plus |
| CG4266-RB | 4662 | CG4266-RB | 1090..4116 | 635..3661 | 15135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21162259..21163154 | 3661..2766 | 4480 | 100 | Minus |
| 2R | 25286936 | 2R | 21164299..21165044 | 1953..1208 | 3730 | 100 | Minus |
| 2R | 25286936 | 2R | 21167595..21168185 | 635..45 | 2955 | 100 | Minus |
| 2R | 25286936 | 2R | 21163754..21164242 | 2438..1950 | 2445 | 100 | Minus |
| 2R | 25286936 | 2R | 21163364..21163696 | 2770..2438 | 1665 | 100 | Minus |
| 2R | 25286936 | 2R | 21165559..21165876 | 1208..891 | 1590 | 100 | Minus |
| 2R | 25286936 | 2R | 21166889..21167043 | 788..634 | 775 | 100 | Minus |
| 2R | 25286936 | 2R | 21166728..21166836 | 894..786 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:13:50 has no hits.
BO33751.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 14:25:18 Download gff for
BO33751.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4266-RA | 198..3842 | 17..3663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:23 Download gff for
BO33751.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4266-RA | 199..3843 | 17..3663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:52 Download gff for
BO33751.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4266-RA | 199..3843 | 17..3663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:52 Download gff for
BO33751.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21162257..21163151 | 2769..3663 | 99 | <- | Minus |
| 2R | 21163366..21163695 | 2439..2768 | 100 | <- | Minus |
| 2R | 21163754..21164239 | 1953..2438 | 100 | <- | Minus |
| 2R | 21164300..21165043 | 1209..1952 | 100 | <- | Minus |
| 2R | 21165559..21165874 | 893..1208 | 100 | <- | Minus |
| 2R | 21166730..21166834 | 788..892 | 100 | <- | Minus |
| 2R | 21166890..21167042 | 635..787 | 100 | <- | Minus |
| 2R | 21167596..21168183 | 47..634 | 100 | <- | Minus |
| 2R | 21168432..21168461 | 17..46 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:23 Download gff for
BO33751.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17049762..17050656 | 2769..3663 | 99 | <- | Minus |
| arm_2R | 17050871..17051200 | 2439..2768 | 100 | <- | Minus |
| arm_2R | 17051259..17051744 | 1953..2438 | 100 | <- | Minus |
| arm_2R | 17051805..17052548 | 1209..1952 | 100 | <- | Minus |
| arm_2R | 17053064..17053379 | 893..1208 | 100 | <- | Minus |
| arm_2R | 17054235..17054339 | 788..892 | 100 | <- | Minus |
| arm_2R | 17054395..17054547 | 635..787 | 100 | <- | Minus |
| arm_2R | 17055101..17055688 | 47..634 | 100 | <- | Minus |
| arm_2R | 17055937..17055966 | 17..46 | 100 | | Minus |
BO33751.pep Sequence
Translation from 16 to 3679
> BO33751.pep
METVVAFNNELSGLYDSRPPISKAKMAAITKSAMRAIKLYKHVVQSVEKF
ILKCKPEYKVPGLYVIDSIVRQSRHQYGMDKDLFAPRFQRNLTETFANLF
RCAPEDKSRIIRVLNLWQKNNVFKSEVIQPIFDLADPNHPIYHQMPPVGG
SGGQGGGVGPGPSSSGALSLADISSGPNGLNSSGMEISMNSSGGDDKMGG
AMPDLSEKKIKQLLNNPNVLRQLHTLQNFQNLKPQEENQKHRYQDEALQQ
HFQNVMKGNAGMPPGMGMGMNMNDSMDLNKDVEFISEQQTIEVINLDGGD
SRSPTPDRDRYKRSRRNSRSRTRSPRGRGAGGGTGNDRRRRGTRSRSRSR
SPRSSRRRGSRDRDRMDRSNRDKERDREHERERRKKGLPDIKKEHLSVCS
TTLWVGHLSKLVYQEELSDTFGEYGDIVSIDQIVPRGCAFIVMNRRQDAH
KAMQALKNHKLQGRAITISWAAGKGVKSKEWKDYWDLELGVTYIPWSKLS
SDTDFDALEEGGMFDEDTMPIQMKQKINQAKNAAKEHKGASIAEAAGAPS
VGVPPPNLIFGIDTTQPPPVGPVGPVGPPPGPGAPPPGLMGMVRGQFPMA
PPMGINMPPPIMMPPTNMPPPMMMPTTNMPPPMMMPPTMMPPGFPGIGGP
PHPMALPPGAPFPPPGAVPPPIPSGGQISNSGNVSDDQMDIEMDLEDAPP
LPPQQQANFNPSPSNVDLSPAAMANEMFQQRDRERDRDNRDRSRGPGNSR
WGGRDDVVEAAERWRAENGGGGGGPGSGLGPNAAFNEARARLNLNPIEHG
MPRPDFMDFDNRGGPGGPRGMGPRGNHNGGGPGGDFFPPNMNHNRFNQPT
SLMQMRIPPPASFNQRMGGPAGNGGNGVGPMFMRNQGGGPGGAGPSGGGP
GGAGTGGGGPGGRQQGPGFFNPRNPFNDNQRGRGGQSGGGVRGVGGGGGG
GPGGRGRWSDDEDEGGNNFKRRGGPGGPGGNRFRGERGGEMMDDRRGNNS
RGGRGGPREDRERPGFGNRRGSRDDSNRHSISSTDEGNKAASETEPKPKN
VETELGSTNTGAPAAATRVDTEEDWDQELQDYEARMEAQKPGERASQSAN
SPPQEKLPAENENFAKPADVTGDPLVAKSQTETSAACTPLYDELPPPAVP
QTPTQPPKEPQGSPPRPAPPVIETEAAPHEESVPAPPAELQTEAPSAEEP
IAPAASADVVAEADPASFLDH
BO33751.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4266-PA | 1215 | CG4266-PA | 1..1215 | 1..1215 | 6568 | 100 | Plus |
| CG4266-PD | 1212 | CG4266-PD | 1..1212 | 1..1215 | 6540 | 99.8 | Plus |
| CG4266-PB | 1306 | CG4266-PB | 285..1306 | 194..1215 | 5506 | 99.1 | Plus |
| CG4266-PB | 1306 | CG4266-PB | 1..206 | 1..206 | 1072 | 100 | Plus |
| CG4266-PC | 412 | CG4266-PC | 1..206 | 1..206 | 1072 | 100 | Plus |
| CG4266-PC | 412 | CG4266-PC | 285..390 | 194..299 | 465 | 86.8 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 302..540 | 766..1021 | 267 | 33.3 | Plus |
