BO33758.complete Sequence
844 bp assembled on 2012-12-20
GenBank Submission: KX793947
> BO33758.complete
GAAGTTATCAGTCGACATGGAAACCCCAAGCGAGTTAACTGAGAAACAGA
ACCAAGACCAACCTACCTACCAGCCGCGACTGAACGAGGTGGCCCAAAAG
TTTCTCGCCGATTTGGACGCGGAGCGCAAGCGATTGTCCGCGGAGTTTCC
ACTTTGCGCTCTGCTAATCGACGAATCTGTGGACCGTGTCTACTCCACTG
GTCGCATTCCCGGCAAGGAGCCCTTCGCAGACGTGTACCAGCAGAAGCCG
ATGAAGATTATCCAAAAGGTCTTCGTGCCTGTTAATAAGTTTCCCAAGTT
CAACTTCACTGGCAAGATCCTAGGGCCCAAGGGCAACTCGCTGCGTCGCC
TTCAGGAGGAGACCCACTGCAAGATTGTCATCAAGGGTCGCAACTCGATG
CGCGATCGTAACAAAGAGGAGGAGCTGCGCAGCTCAGGCGACCCGAGATA
TGCCCATCTTCACAAGGATCTCTTTTTGGAGGTCAGCGCGGTGGCCCCTC
CGGCGGAGTGCTATGCACGGATAGCCTACGCCCTGGCCGAGATCCGTAAG
TACCTCATTCCAGACGATAACGACGATGTTTGGCACGAGCAGCAGCGCGA
GCTGATGGAAATGAATCCCAAGTCGGCCAAGAAAAGTAACGGACTCAATA
TGGCGCCCTACAGATCGAATTTCGACAAGGCGATTGGAGCCATCAGGAAT
AGGGCTCCCAAGTACAACAACCAGATTAGGCGAGTTACGGAAAATCCGCG
CGAAGTCGCCTATATGGAGGAGGTGGAATATGATTATGATGAACATCTTA
TGTTCTGCTCCCCAGTCGTCCGTCTAGCAAGCTTTCTAGACCAT
BO33758.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3927-RA | 813 | CG3927-PA | 1..810 | 17..826 | 4035 | 99.9 | Plus |
nsr-RB | 1023 | CG3875-PB | 51..801 | 52..802 | 3260 | 95.6 | Plus |
nsr-RA | 1023 | CG3875-PA | 51..801 | 52..802 | 3260 | 95.6 | Plus |
nsr-RB | 1023 | CG3875-PB | 1..47 | 17..63 | 190 | 93.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3927-RA | 1077 | CG3927-RA | 76..885 | 17..826 | 4035 | 99.9 | Plus |
nsr-RB | 2523 | CG3875-RB | 132..882 | 52..802 | 3260 | 95.6 | Plus |
nsr-RA | 1235 | CG3875-RA | 132..882 | 52..802 | 3260 | 95.6 | Plus |
nsr-RB | 2523 | CG3875-RB | 82..128 | 17..63 | 190 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22595151..22595517 | 297..663 | 1835 | 100 | Plus |
2R | 25286936 | 2R | 22651051..22651417 | 297..663 | 1655 | 96.7 | Plus |
2R | 25286936 | 2R | 22410687..22411053 | 663..297 | 1220 | 88.8 | Minus |
2R | 25286936 | 2R | 21773807..21774167 | 297..663 | 1125 | 87.7 | Plus |
2L | 23513712 | 2L | 20863415..20863772 | 663..297 | 1030 | 86.6 | Minus |
2R | 25286936 | 2R | 22594752..22594911 | 17..176 | 785 | 99.4 | Plus |
2R | 25286936 | 2R | 22594970..22595091 | 177..298 | 610 | 100 | Plus |
2R | 25286936 | 2R | 22650687..22650811 | 52..176 | 580 | 97.6 | Plus |
2R | 25286936 | 2R | 22595639..22595731 | 661..753 | 465 | 100 | Plus |
2R | 25286936 | 2R | 22650870..22650991 | 177..298 | 460 | 91.8 | Plus |
2R | 25286936 | 2R | 22411295..22411400 | 174..69 | 440 | 94.3 | Minus |
2R | 25286936 | 2R | 21773458..21773564 | 68..174 | 430 | 93.5 | Plus |
2R | 25286936 | 2R | 21773630..21773747 | 181..298 | 425 | 90.7 | Plus |
2L | 23513712 | 2L | 20901193..20901291 | 70..168 | 405 | 93.9 | Plus |
2R | 25286936 | 2R | 22411112..22411233 | 298..177 | 400 | 88.5 | Minus |
2L | 23513712 | 2L | 20924169..20924290 | 177..298 | 385 | 87.7 | Plus |
2L | 23513712 | 2L | 20924004..20924103 | 69..168 | 380 | 92 | Plus |
2R | 25286936 | 2R | 22651539..22651631 | 661..753 | 375 | 93.5 | Plus |
2R | 25286936 | 2R | 22595859..22595931 | 754..826 | 365 | 100 | Plus |
2L | 23513712 | 2L | 20901339..20901440 | 197..298 | 330 | 88.2 | Plus |
2R | 25286936 | 2R | 17471170..17471308 | 297..435 | 305 | 81.3 | Plus |
2R | 25286936 | 2R | 22414816..22414958 | 435..293 | 265 | 79 | Minus |
2R | 25286936 | 2R | 22416559..22416629 | 311..381 | 235 | 88.7 | Plus |
2R | 25286936 | 2R | 22651759..22651807 | 754..802 | 215 | 95.9 | Plus |
2R | 25286936 | 2R | 22410539..22410621 | 753..671 | 190 | 81.9 | Minus |
2R | 25286936 | 2R | 22650637..22650683 | 17..63 | 190 | 93.6 | Plus |
2L | 23513712 | 2L | 20901442..20901494 | 399..451 | 190 | 90.6 | Plus |
2R | 25286936 | 2R | 21774430..21774478 | 754..802 | 185 | 91.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:03:18 has no hits.
BO33758.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-12-20 11:59:36 Download gff for
BO33758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3927-RA | 65..874 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:22 Download gff for
BO33758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3927-RA | 65..874 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:17 Download gff for
BO33758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3927-RA | 76..885 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:17 Download gff for
BO33758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22594752..22594911 | 17..176 | 99 | -> | Plus |
2R | 22594970..22595091 | 177..298 | 100 | -> | Plus |
2R | 22595153..22595517 | 299..663 | 100 | -> | Plus |
2R | 22595642..22595731 | 664..753 | 100 | -> | Plus |
2R | 22595859..22595931 | 754..828 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:22 Download gff for
BO33758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18482257..18482416 | 17..176 | 99 | -> | Plus |
arm_2R | 18482475..18482596 | 177..298 | 100 | -> | Plus |
arm_2R | 18482658..18483022 | 299..663 | 100 | -> | Plus |
arm_2R | 18483147..18483236 | 664..753 | 100 | -> | Plus |
arm_2R | 18483364..18483436 | 754..828 | 97 | | Plus |
BO33758.pep Sequence
Translation from 16 to 844
> BO33758.pep
METPSELTEKQNQDQPTYQPRLNEVAQKFLADLDAERKRLSAEFPLCALL
IDESVDRVYSTGRIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGK
ILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHK
DLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQRELMEMN
PKSAKKSNGLNMAPYRSNFDKAIGAIRNRAPKYNNQIRRVTENPREVAYM
EEVEYDYDEHLMFCSPVVRLASFLDH
BO33758.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3927-PA | 270 | CG3927-PA | 1..270 | 1..270 | 1417 | 100 | Plus |
nsr-PB | 340 | CG3875-PB | 1..267 | 1..262 | 1223 | 89.1 | Plus |
nsr-PA | 340 | CG3875-PA | 1..267 | 1..262 | 1223 | 89.1 | Plus |
qkr58E-3-PD | 317 | CG3584-PD | 1..260 | 1..261 | 1001 | 75.7 | Plus |
qkr58E-3-PB | 317 | CG3584-PB | 1..260 | 1..261 | 1001 | 75.7 | Plus |