Clone BO33758 Report

Search the DGRC for BO33758

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:337
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG3927-RA
Protein status:BO33758.pep: Imported from assembly
Sequenced Size:844

Clone Sequence Records

BO33758.complete Sequence

844 bp assembled on 2012-12-20

GenBank Submission: KX793947

> BO33758.complete
GAAGTTATCAGTCGACATGGAAACCCCAAGCGAGTTAACTGAGAAACAGA
ACCAAGACCAACCTACCTACCAGCCGCGACTGAACGAGGTGGCCCAAAAG
TTTCTCGCCGATTTGGACGCGGAGCGCAAGCGATTGTCCGCGGAGTTTCC
ACTTTGCGCTCTGCTAATCGACGAATCTGTGGACCGTGTCTACTCCACTG
GTCGCATTCCCGGCAAGGAGCCCTTCGCAGACGTGTACCAGCAGAAGCCG
ATGAAGATTATCCAAAAGGTCTTCGTGCCTGTTAATAAGTTTCCCAAGTT
CAACTTCACTGGCAAGATCCTAGGGCCCAAGGGCAACTCGCTGCGTCGCC
TTCAGGAGGAGACCCACTGCAAGATTGTCATCAAGGGTCGCAACTCGATG
CGCGATCGTAACAAAGAGGAGGAGCTGCGCAGCTCAGGCGACCCGAGATA
TGCCCATCTTCACAAGGATCTCTTTTTGGAGGTCAGCGCGGTGGCCCCTC
CGGCGGAGTGCTATGCACGGATAGCCTACGCCCTGGCCGAGATCCGTAAG
TACCTCATTCCAGACGATAACGACGATGTTTGGCACGAGCAGCAGCGCGA
GCTGATGGAAATGAATCCCAAGTCGGCCAAGAAAAGTAACGGACTCAATA
TGGCGCCCTACAGATCGAATTTCGACAAGGCGATTGGAGCCATCAGGAAT
AGGGCTCCCAAGTACAACAACCAGATTAGGCGAGTTACGGAAAATCCGCG
CGAAGTCGCCTATATGGAGGAGGTGGAATATGATTATGATGAACATCTTA
TGTTCTGCTCCCCAGTCGTCCGTCTAGCAAGCTTTCTAGACCAT

BO33758.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3927-RA 813 CG3927-PA 1..810 17..826 4035 99.9 Plus
nsr-RB 1023 CG3875-PB 51..801 52..802 3260 95.6 Plus
nsr-RA 1023 CG3875-PA 51..801 52..802 3260 95.6 Plus
nsr-RB 1023 CG3875-PB 1..47 17..63 190 93.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3927-RA 1077 CG3927-RA 76..885 17..826 4035 99.9 Plus
nsr-RB 2523 CG3875-RB 132..882 52..802 3260 95.6 Plus
nsr-RA 1235 CG3875-RA 132..882 52..802 3260 95.6 Plus
nsr-RB 2523 CG3875-RB 82..128 17..63 190 93.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22595151..22595517 297..663 1835 100 Plus
2R 25286936 2R 22651051..22651417 297..663 1655 96.7 Plus
2R 25286936 2R 22410687..22411053 663..297 1220 88.8 Minus
2R 25286936 2R 21773807..21774167 297..663 1125 87.7 Plus
2L 23513712 2L 20863415..20863772 663..297 1030 86.6 Minus
2R 25286936 2R 22594752..22594911 17..176 785 99.4 Plus
2R 25286936 2R 22594970..22595091 177..298 610 100 Plus
2R 25286936 2R 22650687..22650811 52..176 580 97.6 Plus
2R 25286936 2R 22595639..22595731 661..753 465 100 Plus
2R 25286936 2R 22650870..22650991 177..298 460 91.8 Plus
2R 25286936 2R 22411295..22411400 174..69 440 94.3 Minus
2R 25286936 2R 21773458..21773564 68..174 430 93.5 Plus
2R 25286936 2R 21773630..21773747 181..298 425 90.7 Plus
2L 23513712 2L 20901193..20901291 70..168 405 93.9 Plus
2R 25286936 2R 22411112..22411233 298..177 400 88.5 Minus
2L 23513712 2L 20924169..20924290 177..298 385 87.7 Plus
2L 23513712 2L 20924004..20924103 69..168 380 92 Plus
2R 25286936 2R 22651539..22651631 661..753 375 93.5 Plus
2R 25286936 2R 22595859..22595931 754..826 365 100 Plus
2L 23513712 2L 20901339..20901440 197..298 330 88.2 Plus
2R 25286936 2R 17471170..17471308 297..435 305 81.3 Plus
2R 25286936 2R 22414816..22414958 435..293 265 79 Minus
2R 25286936 2R 22416559..22416629 311..381 235 88.7 Plus
2R 25286936 2R 22651759..22651807 754..802 215 95.9 Plus
2R 25286936 2R 22410539..22410621 753..671 190 81.9 Minus
2R 25286936 2R 22650637..22650683 17..63 190 93.6 Plus
2L 23513712 2L 20901442..20901494 399..451 190 90.6 Plus
2R 25286936 2R 21774430..21774478 754..802 185 91.8 Plus
Blast to na_te.dros performed on 2014-11-28 13:03:18 has no hits.

BO33758.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-12-20 11:59:36 Download gff for BO33758.complete
Subject Subject Range Query Range Percent Splice Strand
CG3927-RA 65..874 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:22 Download gff for BO33758.complete
Subject Subject Range Query Range Percent Splice Strand
CG3927-RA 65..874 17..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:17 Download gff for BO33758.complete
Subject Subject Range Query Range Percent Splice Strand
CG3927-RA 76..885 17..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:17 Download gff for BO33758.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22594752..22594911 17..176 99 -> Plus
2R 22594970..22595091 177..298 100 -> Plus
2R 22595153..22595517 299..663 100 -> Plus
2R 22595642..22595731 664..753 100 -> Plus
2R 22595859..22595931 754..828 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:22 Download gff for BO33758.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18482257..18482416 17..176 99 -> Plus
arm_2R 18482475..18482596 177..298 100 -> Plus
arm_2R 18482658..18483022 299..663 100 -> Plus
arm_2R 18483147..18483236 664..753 100 -> Plus
arm_2R 18483364..18483436 754..828 97   Plus

BO33758.pep Sequence

Translation from 16 to 844

> BO33758.pep
METPSELTEKQNQDQPTYQPRLNEVAQKFLADLDAERKRLSAEFPLCALL
IDESVDRVYSTGRIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGK
ILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHK
DLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQRELMEMN
PKSAKKSNGLNMAPYRSNFDKAIGAIRNRAPKYNNQIRRVTENPREVAYM
EEVEYDYDEHLMFCSPVVRLASFLDH

BO33758.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3927-PA 270 CG3927-PA 1..270 1..270 1417 100 Plus
nsr-PB 340 CG3875-PB 1..267 1..262 1223 89.1 Plus
nsr-PA 340 CG3875-PA 1..267 1..262 1223 89.1 Plus
qkr58E-3-PD 317 CG3584-PD 1..260 1..261 1001 75.7 Plus
qkr58E-3-PB 317 CG3584-PB 1..260 1..261 1001 75.7 Plus