BO33822.complete Sequence
3148 bp assembled on 2013-04-18
GenBank Submission: KX799329
> BO33822.complete
GAAGTTATCAGTCGACATGGCGGAGGAGAATCCCGGAGCTCTTGCCGCCA
ACGTGCCCTATTTGGGAGTGGATGAGTTGGGCGCATCGGTGATTGTGGAG
CCTGGTTTGGAAGGATCCAATGCCGGAGGCCGGACGCTACCGGCTGCGGC
CATTAAGTTTGCTGATCTCACCGAGAGCGGCAGTGAGTCGGGAGACAACG
AGGCCGAGGAACCTGTATCCGCTGGCCCGGATAATGCCAACGCCATCGGT
GAGCCGGGCACCAGTGCATCCGCCGCGGAGGAGAACGGAACAGTAGAGCG
CAACTCGCCGCCGCCCAATTGCGCCATCTGCTTGTCCCGCTGCAGGAGGA
AGTGCTTCACGGACTCGTGCATGCACCAGTTCTGCTTCAAGTGCCTGTGC
GAGTGGAGCAAGATAAAGCCCGAGTGTCCACTGTGTAAGCAGCCCTTCAG
AACCATCATACACAATGTCCGCACCCTGGACGACTACGATCGCTACCCGG
TGCAGACTACGTCGCCGGTTCCAACAGAAAATCCCTCCCTACGTTACCAC
ATTGTGAGGCGTCCCAGGTACACGCCGCTGGTGCAGAACCAGGCCGTCAT
TGTCAACGACATCGAGGCGGCCATAGCGGCAGGAGCTGCTGGTGAAGATG
TGCTTTCGGCGGCAGAAGTAGCAGCTGGCAGGCGATCGTACAGCCGCTTT
GAGCCGTATCGCTCGGAGCTGATGAATTACTACCAGCACGATCAGGATGC
ATCCACGTCGGGTTCATTGAGCCAGCTCTGGCGACGTTATGTGTACGATA
GAAAGCTGTATGCTCTGCCCGTCAGCGACAGCGTGACTGGACACTTTCGA
GAGTGGAGCGCCCGTTTTTACAGAAACAATCCTGCTCAGATTCATCGCCT
GATGCCTTGGATCCATCGCGACATCATGTGCCTACTGAGGAATGCCGCAC
ATAGCGTAAATACTGTGATGACTCTGATGAGCGACCTCCTGCCCATGACT
AGCTTACTAGGTCCTACATTCCGTCGACGGCTGTCGCCGTATCTCGGCGA
GCGCACCAGTCACTTTATCCACGAACTGTTTAACTTTGCCCGCTCCCCGT
ATGACATAAACGGTTACGATCATGTGGTGCAGTATTCGGCACGAGTGGCT
GAGGAGGTGGAGGTGGATCTGTTGGACATGGTGGAGACACAATCCTCGAA
CGGTGATGATCTGAATTTGGAGGTCGGAGATAGCGATGCGGATGCTATAA
ACGCTGGCTTCTCTCCGGATTGGAGCCCCCCTAGGGTACGCCCGTCGACC
AGTGTGATTGTGACCAATCCTGGTGCCACACATTCCTTCAGCGTGACAAT
GGCCAGTGATGGCAGTGAGCTGCCGGGGATTTCCATACGCCGTACAACCA
ATGTGGGCTCACAAACGGTTGCCATTAACCTGAGCATGAGGCGCCCAGCG
GCGGTTGCCAGCGAGGAACCAGAGGTCATCGAGATCGACGACGGCGATGC
GGCCGCAAATGCAGAGGTGGCGGCCATCAATGATGGCAGCAACACCAGTA
GGAGACACGCAGGTGCTACTCTTCCAGTGACGGCGCACATCGAACTGGAG
AGCAGCAGCAGTTCCGGCGATGAGGATGAGTGCGTCTTTGTGCTGGAGCT
GAAGCCACCACACATGCGCACTCCCGAACAGGTGAGCCTTGACTCAAATA
GTGACTCCGATGTGGTGTTCGTAAATGAGCAGCACGAAGCTGCGCCGGAC
GCAATTGCCGAAAACCGGTCGACACAATCCCCTTTGGATCTGGCCTCCAG
GGATCAGGGCCTGTTTATGGGGCCCAGCACAAGTGGCGCAGCGGCCAACA
GAGGCAAGAACTGGAAGCTGGTCATGGCGCAGACACGGCGCCTCGATCAG
TTGCGCACGCTGCGCTCTATACGTTCGAAGAAATCACGCCGTTCATCCAT
GCCTGCCCGCAGTGACAGTGGCAGCAGCCCCAGCAGCTGCAGCAGCTCCT
CCTTTCACTTCAGCAGCAGCAGCGATGAGGATAGCAGTGACAGTAGTACC
ACCAACTCCGAGCCACCCAAGAAAAAGTCACGCAAGCGAGTGGCGAATAA
TAAGCGCTCTAAAAAGGAGTCAATCGGGAAAAGGACATCTCGTAAACGGA
AGGCCAAAGACCAGAATATGGAAATGCTTGAGCAGCAGCAGATAAGCCAA
AAGAAGCCCCAGCGCCAACCGGAAAGCAGCAGTGACAGTCCAAGTTCGTC
CGATGACGAGTCAGGTGGCGATAGCAGCGAGTCATCCGGTCAACCCAACA
CGAACAACAACAAATCCAGCAGCGATTCCGATGATGATAGCGCTGTAAAC
ATGCAGCTCAGTGCCTTGCGCGCCACACTAAAAGCGGAGGCAACTCTGGA
GGATAGGAAACCTGTAAAACTGGAGCTTCAGTTGCCGGATGACGACCAGG
CGGGGCCCCTCCACTCACGGATGACTCCATCGCCGAGAGAGGATAACGAA
CCGGGTTGCAGTGCACCGAAACGGCGACGCAGTTGCAGCCACAGCAATCA
GTCCAGCCAGAGTGCCAGTTTGGCCAGCAGTTCGACAGCCACCTCGAGCT
CGGCTCCATTAAGTTCGTTTGCCTGGGGAGCAGCGGGCTTTTCCGGCGAT
CCGCTGATGCGCGGACATCCGGCGATGGAAGAGCACGACATAGCCAACTC
CCTAATCGAACTGTCCACTCTAACGCAGCCTGTGAACATCGGACTCTTCA
ACGAGCATTATAATTCGGCAGAGAATTCCATGGGCATGCTGAGCAACACG
TTGTGCGACAGCCCACAAACTTTGGCGGCGGATGACGCCAATCTAGAGAA
CTATTTCGATACAGATGCGGATCCGGAGGCCAGCCGTGAACGGGATGCCT
ATTCGCTGGAGGCCGCAATCGATGTAGTTGGCGAATCAGAGTTGCAAATC
GCCGAGGATACAGCCACTGCCACCGAAGAACAAGATGAGGAGGACGAAGA
GGATGAAGATCAAGAGGAAGACGACCAGGAAGAGGAAAAAGCTGCGGAGG
AAGAAGAGGAAGAGGAGGAGGACGACGATGATAGCGACAACCACGATGAA
AACGATGAGAATCAGGGACTACTGCCGTATGCAAGCTTTCTAGACCAT
BO33822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Topors-RB | 3117 | CG15104-PB | 1..3114 | 17..3130 | 15570 | 100 | Plus |
| Topors-RA | 3117 | CG15104-PA | 1..3114 | 17..3130 | 15570 | 100 | Plus |
| up-RN | 1185 | CG7107-PN | 1090..1178 | 2984..3072 | 205 | 82 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Topors-RB | 4298 | CG15104-RB | 657..3770 | 17..3130 | 15570 | 100 | Plus |
| Topors-RA | 4042 | CG15104-RA | 401..3514 | 17..3130 | 15570 | 100 | Plus |
| up-RN | 1629 | CG7107-RN | 1214..1302 | 2984..3072 | 205 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18974305..18975727 | 868..2290 | 7100 | 99.9 | Plus |
| 2R | 25286936 | 2R | 18975892..18976734 | 2288..3130 | 4215 | 100 | Plus |
| 2R | 25286936 | 2R | 18973781..18974243 | 411..873 | 2315 | 100 | Plus |
| 2R | 25286936 | 2R | 18973327..18973726 | 17..416 | 1985 | 99.8 | Plus |
| X | 23542271 | X | 13593801..13593889 | 3072..2984 | 205 | 82 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:16:40 has no hits.
BO33822.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 14:58:21 Download gff for
BO33822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Topors-RA | 384..3497 | 17..3132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:13 Download gff for
BO33822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Topors-RA | 401..3514 | 17..3132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:25:06 Download gff for
BO33822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Topors-RA | 401..3514 | 17..3132 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:25:06 Download gff for
BO33822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18973327..18973722 | 17..412 | 100 | -> | Plus |
| 2R | 18973783..18974243 | 413..873 | 100 | -> | Plus |
| 2R | 18974311..18975725 | 874..2288 | 100 | -> | Plus |
| 2R | 18975893..18976734 | 2289..3132 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:13 Download gff for
BO33822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14860832..14861227 | 17..412 | 100 | -> | Plus |
| arm_2R | 14861288..14861748 | 413..873 | 100 | -> | Plus |
| arm_2R | 14861816..14863230 | 874..2288 | 100 | -> | Plus |
| arm_2R | 14863398..14864239 | 2289..3132 | 99 | | Plus |
BO33822.pep Sequence
Translation from 16 to 3148
> BO33822.pep
MAEENPGALAANVPYLGVDELGASVIVEPGLEGSNAGGRTLPAAAIKFAD
LTESGSESGDNEAEEPVSAGPDNANAIGEPGTSASAAEENGTVERNSPPP
NCAICLSRCRRKCFTDSCMHQFCFKCLCEWSKIKPECPLCKQPFRTIIHN
VRTLDDYDRYPVQTTSPVPTENPSLRYHIVRRPRYTPLVQNQAVIVNDIE
AAIAAGAAGEDVLSAAEVAAGRRSYSRFEPYRSELMNYYQHDQDASTSGS
LSQLWRRYVYDRKLYALPVSDSVTGHFREWSARFYRNNPAQIHRLMPWIH
RDIMCLLRNAAHSVNTVMTLMSDLLPMTSLLGPTFRRRLSPYLGERTSHF
IHELFNFARSPYDINGYDHVVQYSARVAEEVEVDLLDMVETQSSNGDDLN
LEVGDSDADAINAGFSPDWSPPRVRPSTSVIVTNPGATHSFSVTMASDGS
ELPGISIRRTTNVGSQTVAINLSMRRPAAVASEEPEVIEIDDGDAAANAE
VAAINDGSNTSRRHAGATLPVTAHIELESSSSSGDEDECVFVLELKPPHM
RTPEQVSLDSNSDSDVVFVNEQHEAAPDAIAENRSTQSPLDLASRDQGLF
MGPSTSGAAANRGKNWKLVMAQTRRLDQLRTLRSIRSKKSRRSSMPARSD
SGSSPSSCSSSSFHFSSSSDEDSSDSSTTNSEPPKKKSRKRVANNKRSKK
ESIGKRTSRKRKAKDQNMEMLEQQQISQKKPQRQPESSSDSPSSSDDESG
GDSSESSGQPNTNNNKSSSDSDDDSAVNMQLSALRATLKAEATLEDRKPV
KLELQLPDDDQAGPLHSRMTPSPREDNEPGCSAPKRRRSCSHSNQSSQSA
SLASSSTATSSSAPLSSFAWGAAGFSGDPLMRGHPAMEEHDIANSLIELS
TLTQPVNIGLFNEHYNSAENSMGMLSNTLCDSPQTLAADDANLENYFDTD
ADPEASRERDAYSLEAAIDVVGESELQIAEDTATATEEQDEEDEEDEDQE
EDDQEEEKAAEEEEEEEEDDDDSDNHDENDENQGLLPYASFLDH
BO33822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Topors-PB | 1038 | CG15104-PB | 1..1038 | 1..1038 | 5355 | 100 | Plus |
| Topors-PA | 1038 | CG15104-PA | 1..1038 | 1..1038 | 5355 | 100 | Plus |
| CG18605-PB | 415 | CG18605-PB | 9..128 | 255..375 | 257 | 42.6 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 407..1052 | 390..1036 | 221 | 21.4 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 718..1199 | 421..889 | 184 | 21.1 | Plus |
| Mur89F-PC | 2158 | CG4090-PC | 464..997 | 505..1032 | 176 | 18.8 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 318..719 | 635..1036 | 170 | 18.4 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 294..686 | 643..1036 | 163 | 18.6 | Plus |
