BO33826.complete Sequence
2776 bp assembled on 2013-04-18
GenBank Submission: KX796157
> BO33826.complete
GAAGTTATCAGTCGACATGCAGAAGATCCGCCAACAGCACCAGCACTTGA
GTAGCAGCAACGGCCTTCTTGGCAATCAACCTCCTGGTCCGCCGCCACAG
GCCTTCAATCCATTGGCGGGCAATCCGGCAGCTCTCGCCTACAATCAGCT
TCCTCCGCATCCGCCGCACCACATGGCCGCCCATCTGGGCAGCTATGCCG
CTCCACCGCCTCACTATTACATGAGCCAGGCGAAGCCCGCGAAATATAAT
CACTATGGCAGCAATGCAAACAGCAACAGCGGCAGCAACAACAGCAACAG
CAACTATGCCCCCAAGGCCATACTGCAGAATACGTATAGGAATCAGAAGG
TGGTGGTTCCACCAGTGGTGCAGGAAGTAACCCCCGTGCCGGAACCGCCA
GTGACCACCAATAATGCCACCACCAACAGCACCAGCAACAGCACAGTCAT
AGCTAGCGAGCCTGTAACCCAAGAGGATACTTCTCAGAAGCCGGAGACTA
GACAGGAGCCAGCTTCAGCGGACGATCATGTCAGCACGGGGAATATCGAT
GCTACGGGAGCACTGTCCAACGAGGACACGAGCAGTTCAGGACGCGGGGG
CAAGGACAAGACCCCAATGTGCCTGGTCAATGAGTTGGCCAGGTACAACA
AGATCACGCATCAATATCGGTTGACTGAAGAACGAGGACCTGCCCACTGC
AAGACCTTCACGGTGACACTGATGCTGGGCGATGAGGAGTACTCGGCGGA
CGGTTTCAAGATTAAGAAAGCGCAACATTTGGCGGCTAGTAAGGCTATCG
AGGAAACCATGTACAAGCATCCGCCGCCGAAGATTCGCCGCAGCGAAGAA
GGCGGTCCCATGCGCACACACATTACGCCGACGGTGGAATTGAATGCCCT
GGCCATGAAGTTGGGACAGCGTACCTTCTACCTGCTGGATCCCACTCAGA
TTCCTCCCACGGATTCCATAGTGCCGCCGGAGTTTGCCGGCGGTCATTTA
CTAACTGCGCCAGGACCAGGGATGCCGCAACCACCTCCACCACCTGCTTA
CGCTCTCCGCCAGCGGCTTGGCAATGGATTCGTGCCCATTCCATCGCAGC
CGATGCATCCGCATTTCTTTCATGGACCAGGTCAGCGACCGTTTCCTCCG
AAGTTTCCATCACGCTTTGCGCTGCCACCGCCTCTCGGAGCTCATGTACA
TCATGGACCGAATGGCCCATTTCCATCCGTGCCTACGCCACCCAGCAAAA
TCACCCTGTTTGTGGGCAAGCAGAAGTTTGTGGGCATCGGACGCACACTG
CAGCAAGCGAAACATGACGCTGCGGCGAGAGCGCTGCAGGTTCTCAAGAC
ACAGGCCATATCTGCCTCTGAGGAGGCTCTCGAGGATTCGATGGATGAGG
GTGACAAGAAGTCGCCCATCTCGCAGGTTCACGAGATCGGAATTAAGCGC
AACATGACCGTTCATTTTAAGGTGTTGCGCGAGGAGGGGCCGGCGCACAT
GAAGAACTTTATAACAGCCTGCATTGTGGGATCTATTGTCACCGAAGGAG
AAGGAAATGGCAAAAAAGTGTCCAAGAAGCGTGCCGCGGAAAAGATGCTC
GTCGAGTTGCAAAAGCTGCCGCCCCTTACGCCCACCAAGCAAACGCCATT
GAAGCGGATTAAGGTTAAGACACCCGGCAAAAGTGGGGCAGCTGCCCGAG
AAGGTTCGGTTGTGTCGGGCACTGATGGTCCTACGCAAACGGGCAAGCCG
GAGAGACGTAAACGCCTCAATCCGCCGAAGGACAAGCTGATAGACATGGA
CGATGCGGATAATCCCATTACAAAGCTAATTCAACTGCAGCAGACGCGTA
AGGAAAAGGAACCCATTTTCGAGCTGATAGCCAAAAACGGCAATGAAACC
GCTCGACGACGGGAATTCGTTATGGAGGTCTCCGCCAGCGGGAGCACAGC
CCGTGGAACAGGCAACAGCAAGAAGTTGGCAAAGCGAAATGCTGCACAGG
CTCTGTTTGAACTGCTGGAAGCTGTTCAAGTCACACCAACCAACGAAACA
CAGTCATCGGAGGAATGCAGCACTTCGGCAACAATGTCCGCCGTTACAGC
GCCCGCAGTGGAGGCAACTGCGGAAGGCAAAGTGCCCATGGTAGCAACGC
CAGTGGGTCCCATGCCAGGCATTTTAATACTGCGCCAGAACAAGAAACCA
GCAAAGAAGAGGGATCAAATTGTAATTGTCAAGTCTAACGTGGAATCCAA
AGAGGAGGAGGCCAATAAGGAGGTGGCAGTTGCAGCTGAGGAGAATAGCA
ACAACAGTGCAAACTCTGGCGACAGCAGCAACAGCAGCAGCGGCGATTCG
CAAGCCACAGAGGCGGCTAGTGAGAGTGCACTGAATACCTCAACCGGCAG
CAATACGAGTGGTGTGAGTAGCAACAGCAGCAATGTTGGAGCCAACACGG
ATGGTAACAACCATGCCGAGAGTAAAAACAACACGGAGAGTAGCAGCAAC
AGTACGAGTAACACACAAAGCGCTGGTGTGCACATGAAGGAGCAGCTCTT
GTACCTTAGTAAACTGCTGGACTTTGAGGTCAACTTCTCGGACTATCCGA
AAGGCAATCATAACGAGTTCCTGACCATCGTGACATTGTCCACACATCCG
CCGCAGATCTGCCATGGCGTTGGCAAGAGCTCCGAGGAGTCGCAGAATGA
TGCTGCAAGCAATGCCTTGAAAATCCTCAGCAAGCTGGGGCTCAACAATG
CCATGAAAGCAAGCTTTCTAGACCAT
BO33826.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stau-RB | 2745 | CG5753-PB | 1..2742 | 17..2758 | 13710 | 100 | Plus |
| stau-RA | 3081 | CG5753-PA | 337..3078 | 17..2758 | 13710 | 100 | Plus |
| stau-RC | 3078 | CG5753-PC | 337..3075 | 17..2758 | 13630 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:16:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stau-RB | 4910 | CG5753-RB | 281..3022 | 17..2758 | 13710 | 100 | Plus |
| stau-RA | 5240 | CG5753-RA | 611..3352 | 17..2758 | 13710 | 100 | Plus |
| stau-RC | 3509 | CG5753-RC | 611..3349 | 17..2758 | 13630 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:16:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18120728..18122711 | 2000..17 | 9920 | 100 | Minus |
| 2R | 25286936 | 2R | 18120022..18120403 | 2580..2199 | 1910 | 100 | Minus |
| 2R | 25286936 | 2R | 18120467..18120665 | 2198..2000 | 995 | 100 | Minus |
| 2R | 25286936 | 2R | 18119784..18119965 | 2758..2577 | 910 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 13:16:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6857 | 2417..2546 | 150 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6888 | 2276..2432 | 137 | 60.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 115..204 | 2284..2371 | 137 | 67 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9145..9234 | 2284..2371 | 137 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1537..1587 | 2291..2341 | 129 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6786..6825 | 404..443 | 119 | 77.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6934 | 2297..2514 | 116 | 57.5 | Plus |
BO33826.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 14:59:17 Download gff for
BO33826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stau-RA | 664..3405 | 17..2760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:15 Download gff for
BO33826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stau-RA | 611..3352 | 17..2760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:25:08 Download gff for
BO33826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stau-RA | 611..3352 | 17..2760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:25:08 Download gff for
BO33826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18119782..18119963 | 2579..2760 | 98 | <- | Minus |
| 2R | 18120024..18120403 | 2199..2578 | 100 | <- | Minus |
| 2R | 18120467..18120664 | 2001..2198 | 100 | <- | Minus |
| 2R | 18120728..18122711 | 17..2000 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:15 Download gff for
BO33826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14007287..14007468 | 2579..2760 | 98 | <- | Minus |
| arm_2R | 14007529..14007908 | 2199..2578 | 100 | <- | Minus |
| arm_2R | 14007972..14008169 | 2001..2198 | 100 | <- | Minus |
| arm_2R | 14008233..14010216 | 17..2000 | 100 | | Minus |
BO33826.pep Sequence
Translation from 16 to 2776
> BO33826.pep
MQKIRQQHQHLSSSNGLLGNQPPGPPPQAFNPLAGNPAALAYNQLPPHPP
HHMAAHLGSYAAPPPHYYMSQAKPAKYNHYGSNANSNSGSNNSNSNYAPK
AILQNTYRNQKVVVPPVVQEVTPVPEPPVTTNNATTNSTSNSTVIASEPV
TQEDTSQKPETRQEPASADDHVSTGNIDATGALSNEDTSSSGRGGKDKTP
MCLVNELARYNKITHQYRLTEERGPAHCKTFTVTLMLGDEEYSADGFKIK
KAQHLAASKAIEETMYKHPPPKIRRSEEGGPMRTHITPTVELNALAMKLG
QRTFYLLDPTQIPPTDSIVPPEFAGGHLLTAPGPGMPQPPPPPAYALRQR
LGNGFVPIPSQPMHPHFFHGPGQRPFPPKFPSRFALPPPLGAHVHHGPNG
PFPSVPTPPSKITLFVGKQKFVGIGRTLQQAKHDAAARALQVLKTQAISA
SEEALEDSMDEGDKKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFIT
ACIVGSIVTEGEGNGKKVSKKRAAEKMLVELQKLPPLTPTKQTPLKRIKV
KTPGKSGAAAREGSVVSGTDGPTQTGKPERRKRLNPPKDKLIDMDDADNP
ITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGSTARGTGN
SKKLAKRNAAQALFELLEAVQVTPTNETQSSEECSTSATMSAVTAPAVEA
TAEGKVPMVATPVGPMPGILILRQNKKPAKKRDQIVIVKSNVESKEEEAN
KEVAVAAEENSNNSANSGDSSNSSSGDSQATEAASESALNTSTGSNTSGV
SSNSSNVGANTDGNNHAESKNNTESSSNSTSNTQSAGVHMKEQLLYLSKL
LDFEVNFSDYPKGNHNEFLTIVTLSTHPPQICHGVGKSSEESQNDAASNA
LKILSKLGLNNAMKASFLDH
BO33826.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:07:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stau-PB | 914 | CG5753-PB | 1..914 | 1..914 | 4745 | 100 | Plus |
| stau-PA | 1026 | CG5753-PA | 113..1026 | 1..914 | 4745 | 100 | Plus |
| stau-PC | 1025 | CG5753-PC | 113..1025 | 1..914 | 4729 | 99.9 | Plus |
