BO33846.complete Sequence
2716 bp assembled on 2013-09-16
GenBank Submission: KX797207
> BO33846.complete
GAAGTTATCAGTCGACATGTCGGGTAAAAACAGAAAACGCACGGCCAGCA
GCAGCAGCAGCGGTGAGGAGCCGGACAGCGAGGAAGAGTCTCGCCTAAAG
GACCTGCAGGAGCGCGACGAGTTCGCCAGCCGGCTGAAGAAGCGGGATGA
CGATCGGACGCGCAATGTGGTTGATTCCACCGGCGGACGAAGGGCCATCG
AGGAGGCCACCAAGCGACTGAAGCTTGAGCATGAGGATCGGGACAAGATA
GTGCCTCACCTGCGTCTGCAGTCGCGTCGCCAGTACCTGGAGAAGCGCAA
GGATGACAAGGTGGCCGAGCTGGAGGCGGACATCCTGGACGATGAGTACC
TCTTCGATGAGAGCGTCCTGACCAAACGGGAGAAGGAGGAGCGCGAGTAC
AAGAAGCAACTGCTGAACATCGCCAAGGAGCACGAGAAGGCGCGGGAACT
AGAGCGCATCCAGCGTTATAATATGCCGCAGGACCTGAAAAAGGGAGAGC
GATCTGAATACGTTGAGGTTGATGAGTTTGAGAAGCAACCCAACTCAGAG
CAGAAGAAATGGGAGGCTGAACAGCTGGCTTCGGCGCGTTTCCATTTCGG
CGCGAAAGATGCCAAGGCGGAGGAGGAGTATGAGCTGCTACTTGACGATC
AAATCGATTTCATCCAAGCCCTTACCCTGGACGGAAGTCGAGAGAAATCA
TCTAGCCGACAGCCCGAACTCACGGAGAAGGAACGCAAACGTTTGACATT
GGACGAAACCAGAAGATCACTGCCCGTTTATCCGTTCAAGGAGGATCTGA
TTGCTGCTGTAAAGGAACATCAGGTGCTCATCATCGAAGGAGAAACAGGC
TCGGGCAAAACGACACAGGTGCCGCAGTACCTCGTGGAAGCTGGTTTCAC
CAAGGACAAGAAGATGATCGGATGCACGCAACCACGTCGTGTGGCCGCCA
TGTCGGTGGCAGCACGCGTGGCCGAGGAAATGGGCGTGAAGCTGGGCAAC
GAGGTGGGCTACAGCATCCGTTTCGAGGACTGCACCTCGGATCGCACCAT
TCTCAAGTACATGACGGACGGCACCCTGCATCGAGAGTTCCTTTCGGAAC
CCGACTTGGCCTCCTACAGTGTGATGATTATCGATGAGGCTCACGAACGG
ACACTGCACACGGACATTTTGTTTGGCCTGGTCAAGGATATTGCTCGCTT
TAGACCAGAGTTGAAGCTGCTCATTTCCAGTGCCACTCTGGATGCGGAAA
AGTTCTCCGCGTTCTTCGATGATGCACCCATCTTTCGGATACCTGGTCGC
CGCTATCCAGTGGACATATTCTACACCAAGGCTCCGGAAGCGGACTACAT
CGACGCGTGTTGCGTTTCAGTTTTGCAGATTCATGCCACTCAACCTTTGG
GCGACATTCTAGTCTTCCTCACGGGTCAGGATGAGATCGAGACTTGCCAG
GAGGTTCTGCATGATCGCGTAAAGCGGCTGGGCTCCAAAATACGTGAGCT
GATCGTTATACCCGTCTATGCGAATCTACCGAGTGATATGCAGGCCAAAA
TCTTCGAACCCACACCGCCGAATGCCCGAAAAGTTATCCTGGCCACAAAT
ATCGCAGAGACTTCGCTAACCATCGACAACATCATTTATGTAATTGATCC
TGGGTTTGCCAAGCAGAACAATTTTAATTCCCGCACTGGCATGGAGTCGC
TTATGGTGGTGCCCATTTCCAAGGCCTCCGCCAATCAGCGAGCGGGCAGA
GCGGGACGAACTGCTCCGGGAAAGTGCTTCCGTCTGTATACGGCGTGGGC
ATACAAGCATGAACTGGAGGACAATACCGTTCCGGAGATACAGCGTATTA
ATCTGGGCAATGCGGTGCTCATGCTAAAGGCTCTGGGCATCAATGATCTG
ATACACTTCGACTTTCTGGACCCTCCGCCGCACGAGACACTGGTATTGGC
TTTGGAGCAGCTATATGCCCTGGGTGCACTTAATCACCATGGAGAGTTAA
CCAAGCTGGGTCGACGGATGGCCGAGTTTCCCGTGGATCCCATGATGGGC
AAGATGCTGCTGGCAAGCGAAAAATACAAATGCTCCGAGGAGATGGTGAC
CATTGCAGCCATGCTGTCCGTGAATAGCGCCATTTTCTACAGGCCCAAGG
ACAAAATCATTCACGCGGACACAGCCCGAAAAAACTTCAATCACATGCAC
GGCGACCACTTGAGCCTCCTGCAGGTCTACAATCAGTGGGCGGAGACGGA
CTACAGCACCCAGTGGTGCTACGAGAACTTCATCCAGTACAGATCGATGA
AGCGGGCTCGCGACGTGCGGGAGCAGCTGGTGGGACTGATGCAGCGTGTC
GAGATCGACATGGTCAGCTGCCTGCCAGAAACAGTAAACGTGCGCAAGGC
AGCCACCGCTGGTTACTTTTACCATGTGGCGCGACTCTCGAAGGGCGGTC
ACTACAAGACCATCAAGCACAATCAGACCGTGATGATACATCCGAACTCC
TCGCTCTTTGAGGAGCTGCCGCGCTGGGTGCTCTATCACGAGCTGGTGTT
CACCTCCAAGGAGTACATGCGTCAGGTTATAGAGATCGAGAGCAAGTGGT
TGCTGGAGGTGGCTCCGCACTACTACAAGGCCAAGGAGCTGGAGGATTCG
ACGAACAAGAAGATGCCAAAAGTCGCCGGGCGAGCCGAAATGGCGCAAGC
AAGCTTTCTAGACCAT
BO33846.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)37Cb-RA | 2685 | CG10689-PA | 1..2682 | 17..2698 | 13410 | 100 | Plus |
| l(1)G0007-RA | 3669 | CG32604-PA | 1741..1895 | 914..1068 | 340 | 81.3 | Plus |
| CG11107-RB | 2190 | CG11107-PB | 367..509 | 923..1065 | 250 | 78.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)37Cb-RA | 2791 | CG10689-RA | 54..2735 | 17..2698 | 13410 | 100 | Plus |
| l(1)G0007-RA | 3880 | CG32604-RA | 1842..1996 | 914..1068 | 340 | 81.3 | Plus |
| CG11107-RB | 2610 | CG11107-RB | 571..713 | 923..1065 | 250 | 78.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19124746..19126315 | 2073..504 | 7850 | 100 | Minus |
| 2L | 23513712 | 2L | 19124054..19124678 | 2698..2074 | 3125 | 100 | Minus |
| 2L | 23513712 | 2L | 19126574..19126923 | 366..17 | 1750 | 100 | Minus |
| 2L | 23513712 | 2L | 19126376..19126512 | 503..367 | 685 | 100 | Minus |
| 2R | 25286936 | 2R | 7387948..7388090 | 923..1065 | 250 | 78.3 | Plus |
| X | 23542271 | X | 14203203..14203249 | 914..960 | 190 | 93.6 | Plus |
| X | 23542271 | X | 14203449..14203513 | 1004..1068 | 190 | 86.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:46:00 has no hits.
BO33846.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:48:44 Download gff for
BO33846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Cb-RA | 54..2735 | 17..2700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:39 Download gff for
BO33846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Cb-RA | 54..2735 | 17..2700 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:39 Download gff for
BO33846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19124052..19124678 | 2074..2700 | 99 | <- | Minus |
| 2L | 19124746..19126315 | 504..2073 | 100 | <- | Minus |
| 2L | 19126376..19126512 | 367..503 | 100 | <- | Minus |
| 2L | 19126574..19126923 | 17..366 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:48:44 Download gff for
BO33846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19124052..19124678 | 2074..2700 | 99 | <- | Minus |
| arm_2L | 19124746..19126315 | 504..2073 | 100 | <- | Minus |
| arm_2L | 19126376..19126512 | 367..503 | 100 | <- | Minus |
| arm_2L | 19126574..19126923 | 17..366 | 100 | | Minus |
BO33846.pep Sequence
Translation from 16 to 2716
> BO33846.pep
MSGKNRKRTASSSSSGEEPDSEEESRLKDLQERDEFASRLKKRDDDRTRN
VVDSTGGRRAIEEATKRLKLEHEDRDKIVPHLRLQSRRQYLEKRKDDKVA
ELEADILDDEYLFDESVLTKREKEEREYKKQLLNIAKEHEKARELERIQR
YNMPQDLKKGERSEYVEVDEFEKQPNSEQKKWEAEQLASARFHFGAKDAK
AEEEYELLLDDQIDFIQALTLDGSREKSSSRQPELTEKERKRLTLDETRR
SLPVYPFKEDLIAAVKEHQVLIIEGETGSGKTTQVPQYLVEAGFTKDKKM
IGCTQPRRVAAMSVAARVAEEMGVKLGNEVGYSIRFEDCTSDRTILKYMT
DGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIARFRPELK
LLISSATLDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYIDACCV
SVLQIHATQPLGDILVFLTGQDEIETCQEVLHDRVKRLGSKIRELIVIPV
YANLPSDMQAKIFEPTPPNARKVILATNIAETSLTIDNIIYVIDPGFAKQ
NNFNSRTGMESLMVVPISKASANQRAGRAGRTAPGKCFRLYTAWAYKHEL
EDNTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLY
ALGALNHHGELTKLGRRMAEFPVDPMMGKMLLASEKYKCSEEMVTIAAML
SVNSAIFYRPKDKIIHADTARKNFNHMHGDHLSLLQVYNQWAETDYSTQW
CYENFIQYRSMKRARDVREQLVGLMQRVEIDMVSCLPETVNVRKAATAGY
FYHVARLSKGGHYKTIKHNQTVMIHPNSSLFEELPRWVLYHELVFTSKEY
MRQVIEIESKWLLEVAPHYYKAKELEDSTNKKMPKVAGRAEMAQASFLDH
BO33846.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:40:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)37Cb-PA | 894 | CG10689-PA | 1..894 | 1..894 | 4598 | 100 | Plus |
| pea-PA | 1242 | CG8241-PA | 577..1203 | 243..871 | 1987 | 59.5 | Plus |
| CG11107-PB | 729 | CG11107-PB | 56..699 | 236..870 | 1732 | 53.1 | Plus |
| CG11107-PA | 729 | CG11107-PA | 56..699 | 236..870 | 1732 | 53.1 | Plus |
| l(1)G0007-PA | 1222 | CG32604-PA | 455..1168 | 170..887 | 1666 | 45.9 | Plus |
