BO33853.complete Sequence
994 bp assembled on 2012-12-20
GenBank Submission: KX797518
> BO33853.complete
GAAGTTATCAGTCGACATGATAAAAATGGAAACCCCAAGCGAGTTTACTG
AGAAACAGCCACCCACCCACGATCACCAGCCGCGTCTTAACGAGGTGGCC
CAAAAGTTTCTCGCCGATTTGGACGAGGAGCGCCAGCGATTGTCCGCGGA
CTTTCCACTTTGCGCACTGCTAATCGACGAGGCTGTGGACCGTGTCTACT
GCACTGGTCGTATTCCCGGAAAAGAGTTCTACGCAGACGTGTACAAGCAG
AAGCCGATGAAGATTACCCAAAAGGTCTTCGTGCCCGTAAAGCAGTATCC
CAAGTTCAACTTCACTGGCAAGATCCTGGGGCCCAAGGGCAATTCGCTGC
GTCGCCTTCAGGAGGAGACCCAGTGCAAGATTGCCATTAAGGGTCGCAGT
TCGATCCGCGATCGTAACAAAGAAGAGCAGCTGCGCAGCACAGGCGACCC
GAGATATGCTCATCTTCAGAAGGACCTATTTTTGGAGGTCAGCACGGTGG
CCACTCCGGCGGAGTGCTATGCCCGCATAGCCTACGCTCTGGCCGAGATC
CGTAAGTATCTTATTCCAGACAAGAACGACGAGGTTTCACACGAACAGCT
GCGCGAGCTGATGGAAATGGATCCCGAGTCAGCCAAAAACATTCACGGAC
CGAATCTGGAGGCCTACAGATCTGTCTTCGACAAGAAGTTTGGAGGCAAC
AGCAATGGGGCTCCCAAATACATCAACCTGATTAAGAGAGCTGCGGAAAA
TCCGCCCGAAGTCGACGATGTGGAGGAGGTGGCCTATGAGTATGAACATC
GTATGCCCCCCAAGCGTCCGCCTACGGGCTATGAGTACAGCAAACCACGT
CCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCCATATCCGAC
TGACATGAAACGTATGCGCGAACCGCCCATCAAGTCCTATAAGCCCAATC
CGTATACAATACTTAAAAAATATAAAGCAAGCTTTCTAGACCAT
BO33853.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:02:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qkr58E-3-RD | 954 | CG3584-PD | 1..951 | 26..976 | 4755 | 100 | Plus |
| qkr58E-3-RB | 954 | CG3584-PB | 1..951 | 26..976 | 4755 | 100 | Plus |
| qkr58E-3-RC | 954 | CG3584-PC | 1..951 | 26..976 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qkr58E-3-RD | 1729 | CG3584-RD | 88..1047 | 17..976 | 4800 | 100 | Plus |
| qkr58E-3-RB | 1433 | CG3584-RB | 88..1047 | 17..976 | 4800 | 100 | Plus |
| qkr58E-3-RC | 1584 | CG3584-RC | 88..1047 | 17..976 | 4800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22410687..22411053 | 669..303 | 1835 | 100 | Minus |
| 2R | 25286936 | 2R | 22595151..22595517 | 303..669 | 1220 | 88.8 | Plus |
| 2R | 25286936 | 2R | 21773807..21774167 | 303..669 | 1200 | 89.1 | Plus |
| 2R | 25286936 | 2R | 22651051..22651417 | 303..669 | 1145 | 87.5 | Plus |
| 2L | 23513712 | 2L | 20863415..20863772 | 669..303 | 1135 | 88.6 | Minus |
| 2R | 25286936 | 2R | 22411293..22411458 | 182..17 | 830 | 100 | Minus |
| 2R | 25286936 | 2R | 22409890..22410020 | 976..846 | 655 | 100 | Minus |
| 2R | 25286936 | 2R | 22411112..22411234 | 304..182 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 20901134..20901299 | 17..182 | 575 | 89.8 | Plus |
| 2R | 25286936 | 2R | 21773403..21773566 | 22..182 | 560 | 90.9 | Plus |
| 2L | 23513712 | 2L | 20923948..20924111 | 19..182 | 535 | 88.4 | Plus |
| 2R | 25286936 | 2R | 22594744..22594909 | 18..180 | 495 | 88 | Plus |
| 2L | 23513712 | 2L | 20924168..20924290 | 182..304 | 480 | 92.7 | Plus |
| 2R | 25286936 | 2R | 22650704..22650809 | 75..180 | 470 | 96.2 | Plus |
| 2R | 25286936 | 2R | 22410539..22410631 | 759..667 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 22650869..22650991 | 182..304 | 465 | 91.9 | Plus |
| 2R | 25286936 | 2R | 22410311..22410396 | 845..760 | 430 | 100 | Minus |
| 2R | 25286936 | 2R | 21773630..21773747 | 187..304 | 410 | 89.8 | Plus |
| 2R | 25286936 | 2R | 22594969..22595091 | 182..304 | 405 | 88.6 | Plus |
| 2L | 23513712 | 2L | 20901339..20901440 | 203..304 | 405 | 93.1 | Plus |
| 2R | 25286936 | 2R | 22652044..22652129 | 889..974 | 355 | 94.2 | Plus |
| 2L | 23513712 | 2L | 20863213..20863299 | 753..667 | 285 | 88.5 | Minus |
| 2R | 25286936 | 2R | 22651539..22651631 | 667..759 | 270 | 86 | Plus |
| 2R | 25286936 | 2R | 17471170..17471306 | 303..439 | 250 | 78.8 | Plus |
| 2R | 25286936 | 2R | 21774630..21774692 | 889..951 | 240 | 92.1 | Plus |
| 2L | 23513712 | 2L | 20929142..20929234 | 667..759 | 240 | 83.9 | Plus |
| 2R | 25286936 | 2R | 22416559..22416623 | 317..381 | 235 | 90.8 | Plus |
| 2R | 25286936 | 2R | 22414846..22414990 | 411..267 | 230 | 77.2 | Minus |
| 2L | 23513712 | 2L | 20902749..20902787 | 913..951 | 195 | 100 | Plus |
| 2R | 25286936 | 2R | 22595649..22595731 | 677..759 | 190 | 81.9 | Plus |
| 2L | 23513712 | 2L | 20862911..20862963 | 951..899 | 190 | 90.6 | Minus |
| 2R | 25286936 | 2R | 22651759..22651847 | 760..845 | 185 | 83.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:02:39 has no hits.
BO33853.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-12-20 11:59:30 Download gff for
BO33853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr58E-3-RB | 87..1034 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:02 Download gff for
BO33853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr58E-3-RC | 88..1035 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:00 Download gff for
BO33853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr58E-3-RC | 88..1035 | 17..964 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:00 Download gff for
BO33853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22409902..22410020 | 846..964 | 100 | <- | Minus |
| 2R | 22410311..22410396 | 760..845 | 100 | <- | Minus |
| 2R | 22410539..22410628 | 670..759 | 100 | <- | Minus |
| 2R | 22410687..22411051 | 305..669 | 100 | <- | Minus |
| 2R | 22411112..22411233 | 183..304 | 100 | <- | Minus |
| 2R | 22411293..22411458 | 17..182 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:02 Download gff for
BO33853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18297407..18297525 | 846..964 | 100 | <- | Minus |
| arm_2R | 18297816..18297901 | 760..845 | 100 | <- | Minus |
| arm_2R | 18298044..18298133 | 670..759 | 100 | <- | Minus |
| arm_2R | 18298192..18298556 | 305..669 | 100 | <- | Minus |
| arm_2R | 18298617..18298738 | 183..304 | 100 | <- | Minus |
| arm_2R | 18298798..18298963 | 17..182 | 100 | | Minus |
BO33853.pep Sequence
Translation from 16 to 994
> BO33853.pep
MIKMETPSEFTEKQPPTHDHQPRLNEVAQKFLADLDEERQRLSADFPLCA
LLIDEAVDRVYCTGRIPGKEFYADVYKQKPMKITQKVFVPVKQYPKFNFT
GKILGPKGNSLRRLQEETQCKIAIKGRSSIRDRNKEEQLRSTGDPRYAHL
QKDLFLEVSTVATPAECYARIAYALAEIRKYLIPDKNDEVSHEQLRELME
MDPESAKNIHGPNLEAYRSVFDKKFGGNSNGAPKYINLIKRAAENPPEVD
DVEEVAYEYEHRMPPKRPPTGYEYSKPRPSIIPTNAAAYKRPYPTDMKRM
REPPIKSYKPNPYTILKKYKASFLDH
BO33853.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qkr58E-3-PD | 317 | CG3584-PD | 1..317 | 4..320 | 1682 | 100 | Plus |
| qkr58E-3-PB | 317 | CG3584-PB | 1..317 | 4..320 | 1682 | 100 | Plus |
| qkr58E-3-PC | 317 | CG3584-PC | 1..317 | 4..320 | 1682 | 100 | Plus |
| nsr-PB | 340 | CG3875-PB | 1..325 | 4..319 | 1274 | 76.6 | Plus |
| nsr-PA | 340 | CG3875-PA | 1..325 | 4..319 | 1274 | 76.6 | Plus |
