Clone BO33901 Report

Search the DGRC for BO33901

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:339
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptTfIIA-S-2-RA
Protein status:BO33901.pep: Imported from assembly
Sequenced Size:355

Clone Sequence Records

BO33901.complete Sequence

355 bp assembled on 2013-04-19

GenBank Submission: KX796624

> BO33901.complete
GAAGTTATCAGTCGACATGAACTATCAACATTACAGGGCCACAACGCTGG
GCAGAACGCTCCAGGACACTTTGGATGAGATGATGGAGAGGGGCGATATA
ACCAAGAAGATTGCTAATTTGGTTTTACTAAGATATGACAAGAGCATTTC
AACAGCTCTCAAGGATCATGGCACGAGCAATATGTCCTTTACGGCCGAAA
GACTGGAAACCTTTAGATGCTGCGACAATGTGTGGACTCTGATCCTAAAG
GACGCGGAGTTCCGCGAGGATCAGCATTCCTTGAAGGTCGATGTGGTCAA
AATTGTGGCCTGTCTTGGAACTGACAATGGAAATGAAGCAAGCTTTCTAG
ACCAT

BO33901.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-S-2-RA 324 CG11639-PA 1..321 17..337 1605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-S-2-RA 462 CG11639-RA 90..419 8..337 1620 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1011144..1011401 337..80 1260 99.2 Minus
X 23542271 X 1011474..1011554 88..8 375 97.5 Minus
Blast to na_te.dros performed on 2014-11-28 13:20:22 has no hits.

BO33901.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:31:06 Download gff for BO33901.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-S-2-RA 99..419 17..339 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:59 Download gff for BO33901.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-S-2-RA 99..419 17..339 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:26:27 Download gff for BO33901.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-S-2-RA 99..419 17..339 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:26:27 Download gff for BO33901.complete
Subject Subject Range Query Range Percent Splice Strand
X 1011142..1011392 89..339 99 <- Minus
X 1011474..1011545 17..88 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:59 Download gff for BO33901.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 905175..905425 89..339 99 <- Minus
arm_X 905507..905578 17..88 100   Minus

BO33901.pep Sequence

Translation from 16 to 355

> BO33901.pep
MNYQHYRATTLGRTLQDTLDEMMERGDITKKIANLVLLRYDKSISTALKD
HGTSNMSFTAERLETFRCCDNVWTLILKDAEFREDQHSLKVDVVKIVACL
GTDNGNEASFLDH

BO33901.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-S-2-PA 107 CG11639-PA 1..107 1..107 558 100 Plus
TfIIA-S-PA 106 CG5163-PA 1..101 1..101 278 55.4 Plus