Clone BO33909 Report

Search the DGRC for BO33909

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:339
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptObp46a-RA
Protein status:BO33909.pep: Imported from assembly
Sequenced Size:628

Clone Sequence Records

BO33909.complete Sequence

628 bp assembled on 2013-04-19

GenBank Submission: KX793927

> BO33909.complete
GAAGTTATCAGTCGACATGTGCTCCCAACTGTTCGCATTTCTGCTCCTCC
TTTTGACCGCTTTTGTGACGGGTAGAAGTACTCCACCGGCGTTGGATGAA
GACTGTGAACTGAATTCTGTAGATACAATGCATGATTTCTGCTGCGACCT
GCACGACGAGAGTCCCCAGTTTAGCGACTGCCAGATGGAGTGGCACGAAA
AGATTCCATACGAGACGGATGAAGAGGAGCAGACGTACATGTTTTGCACC
GCAGAGTGCAGTTTCAACAGTACGAACTTCTTGGGCAGGGACCGCCGTTC
ACTGAATCTCAATGAGGTAAAGGAGCACTTGGAAAGCGACCTGGTCAACG
ATGCGGACATTAAGCTTCTCTATGACACCTATGTCAAGTGCGACAAGCAT
GCGCTCTCACTGATGCCGCACAAAGGTGTGAAGCAGCTATCCAAACGTCT
TTCGCGTCTTGGCTGTCATCCGTATCCCGGACTGGTCCTCGAGTGCGTGG
CCAACGAGATGATCCTGCACTGTCCCACCAAGCGCTTCCGTCAAACAGCC
CAGTGCGAAGAGACACGCAATCATTTGAAGCAATGTATGCAGTATCTAAA
GTACAAGTCCGCAAGCTTTCTAGACCAT

BO33909.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
Obp46a-RA 597 CG12905-PA 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
Obp46a-RA 597 CG12905-RA 1..594 17..610 2970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10311175..10311384 610..401 1050 100 Minus
2R 25286936 2R 10311442..10311598 401..245 785 100 Minus
2R 25286936 2R 10311650..10311764 244..130 575 100 Minus
2R 25286936 2R 10311910..10312023 130..17 570 100 Minus
Blast to na_te.dros performed 2014-11-28 13:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 3290..3332 256..214 107 72.1 Minus

BO33909.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:31:12 Download gff for BO33909.complete
Subject Subject Range Query Range Percent Splice Strand
Obp46a-RA 1..594 17..612 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:02 Download gff for BO33909.complete
Subject Subject Range Query Range Percent Splice Strand
Obp46a-RA 1..594 17..612 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:26:30 Download gff for BO33909.complete
Subject Subject Range Query Range Percent Splice Strand
Obp46a-RA 1..594 17..612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:26:30 Download gff for BO33909.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10311173..10311383 402..612 99 <- Minus
2R 10311442..10311598 245..401 100 <- Minus
2R 10311650..10311763 131..244 100 <- Minus
2R 10311910..10312023 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:02 Download gff for BO33909.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6198678..6198888 402..612 99 <- Minus
arm_2R 6198947..6199103 245..401 100 <- Minus
arm_2R 6199155..6199268 131..244 100 <- Minus
arm_2R 6199415..6199528 17..130 100   Minus

BO33909.pep Sequence

Translation from 16 to 628

> BO33909.pep
MCSQLFAFLLLLLTAFVTGRSTPPALDEDCELNSVDTMHDFCCDLHDESP
QFSDCQMEWHEKIPYETDEEEQTYMFCTAECSFNSTNFLGRDRRSLNLNE
VKEHLESDLVNDADIKLLYDTYVKCDKHALSLMPHKGVKQLSKRLSRLGC
HPYPGLVLECVANEMILHCPTKRFRQTAQCEETRNHLKQCMQYLKYKSAS
FLDH

BO33909.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
Obp46a-PA 198 CG12905-PA 1..198 1..198 1083 100 Plus