Clone BO33913 Report

Search the DGRC for BO33913

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:339
Well:13
Vector:pDNR-Dual
Associated Gene/Transcriptppk28-RA
Protein status:BO33913.pep: Imported from assembly
Sequenced Size:1852

Clone Sequence Records

BO33913.complete Sequence

1852 bp assembled on 2013-05-17

GenBank Submission: KX797764

> BO33913.complete
GAAGTTATCAGTCGACATGAGGACGTTGACGGAAAGCAGGCGGCGCCAAA
GTGGCTCCTCCGGGTGCAAAAAGGACTCCGAGTCGGATGACGATGAGAAT
ACCATCTGTAGCAGGGCGGCCATTAAGAGGAGTGTGGTCTACTATCTCAA
GAACAGCACCCTCCATGGATTAAAGTACATCGCCGAAGAGAGCATCACCA
TTCCGGAACGCATCTTTTTTGGTCTTGCCTTTGTGCTGGTGGTGATCCTT
TCCGTGTTCTTCATATCCAACGTGTACGTAAAGTGGAGTGCTTCGCCCAT
AATCATTTCGACCAGTGCCAAGCAAAAGCTGACCAGCAACATGCCATTTC
CGGCGATCACGATCTGTAATCTCAACCAGGCGCTGCTAAGCAAAGTGGAT
CGCATTGGACGGACCAGCACGAATTTCTCGCTGCTGATGGGTCTGTGTGA
CCAGGGCGGGGACACGACCATCTCGTACATCGGCACCTGGAAGTACTTCA
AGGCGATCCTGGTGGACGTGGCCCAGCCGTGCGAGAAAATGCTCCTGTAC
TGCAGCTTCGGATCGCGCGAGGAGGACTGCTCCTGGCTCTTCACCTCCAT
ACTGACGGACGATGGGCTGTGCTGCAACTTCAATGCCCTGCATCCGTCGT
ATCTTATACGGAACTACAGTGACGATGTGCGGCTGGAGACGGCTCATCCG
AATACCCGTTATGAGCTCATCGATTGGACACCAGAGAAGGGTTATGCCCG
CAATTTGCCGGAGTTCTACTTTCCGCGCACCTCGGGGGGCACGGGCATCC
GCATGGGTCTCACCGTCGTGCTGAACGCCTCCATAGCGGAGTATTACTGC
ACCAAGTCGATGAGTGTTGGTTTCAAGGTTCTTGTGCACAATCCCGCCGA
GCTGCCAAAAGTGAGCAACTATGGCTTCGTTGTGACCGCGGGACGCGAGG
CACGGATACCCATCGAACCAGTCTATGAGGATGCCCTGCCCACGATACGG
TCAATTAAGAAATCGGTGCGTCGCTGCCTCTTCTCCGATGAGAATGACCT
GGCCTACTATCGGACATATTCGCGTAAGAACTGCGAGCTGGAATGCGAGG
CGAAGTTGCTGCTACGCGAGTGCAGCTGTGTGCTGTACTATCTGCCCCGG
ATCGATCCGTTGGCCAGGGTGTGCGGACCCAACGATAATCAGTGCACGGA
TCGGGTGCAAACCGAGATTGAGTCATCGCTGACGAATCTGTCCTGCGAGA
ACTGCTGGCCGGGTTGCTTCGAGCTAACATACAGGGCCACACTTTCAACG
GCTTCGATCGTTTCGGATCCACGATTTCAGGCCGGCGAGAATCTACCCGA
ATATATCTTCCACGGGCCATATAGCAATGCCAGCGAGATTTCGATATTGC
ACTTCTACTACATGACCAACATATTTCGCAGCACCACCAAGTCCGAGATG
TTTGGCTTTACCGAATTCTTGTCTAATACGGGCGGCCTTTTGGGACTTTT
CATGGGCTTCAGCATTTTTTCGGTGATCGAGATCTTCTTCTACATCACCG
TCCGTCCGTACTGCGCCTCGCGAACACTCCGGCAGCGCCACAAACGCCGC
CTGGAGCAGCTGAGCTGGCTGACGCCGATCAGGATGCCCGTGCGCAGAGC
ACTGCGTCGCAATCGAGGTGGTCTCCTCCGGAATCCGCCGCCGCCGGCGT
ACAGTGATCTGCAAAAGTTCCGCGGGAAACTGGACAAGCCGGAGACATGC
AAGCGGAAACTTTGGCGGACGCTGCAAGTGCGGCCAGTAGTGGATCGGGC
GGATGAGGAACTGCCCACCTATCCCTACCTGGACGCAAGCTTTCTAGACC
AT

BO33913.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
ppk28-RA 1821 CG4805-PA 1..1818 17..1834 9090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
ppk28-RA 2190 CG4805-RA 240..2057 17..1834 9090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16806633..16807302 210..879 3350 100 Plus
X 23542271 X 16807356..16807961 871..1476 3000 99.7 Plus
X 23542271 X 16808021..16808382 1473..1834 1810 100 Plus
X 23542271 X 16806307..16806500 17..210 970 100 Plus
Blast to na_te.dros performed on 2014-11-28 13:37:53 has no hits.

BO33913.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-17 15:32:12 Download gff for BO33913.complete
Subject Subject Range Query Range Percent Splice Strand
ppk28-RA 1..1818 17..1836 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:10:41 Download gff for BO33913.complete
Subject Subject Range Query Range Percent Splice Strand
ppk28-RA 240..2057 17..1836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:38 Download gff for BO33913.complete
Subject Subject Range Query Range Percent Splice Strand
ppk28-RA 240..2057 17..1836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:38 Download gff for BO33913.complete
Subject Subject Range Query Range Percent Splice Strand
X 16806307..16806500 17..210 100 -> Plus
X 16806634..16807300 211..877 100 -> Plus
X 16807363..16807957 878..1472 100 -> Plus
X 16808021..16808382 1473..1836 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:10:41 Download gff for BO33913.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16700340..16700533 17..210 100 -> Plus
arm_X 16700667..16701333 211..877 100 -> Plus
arm_X 16701396..16701990 878..1472 100 -> Plus
arm_X 16702054..16702415 1473..1836 99   Plus

BO33913.pep Sequence

Translation from 16 to 1852

> BO33913.pep
MRTLTESRRRQSGSSGCKKDSESDDDENTICSRAAIKRSVVYYLKNSTLH
GLKYIAEESITIPERIFFGLAFVLVVILSVFFISNVYVKWSASPIIISTS
AKQKLTSNMPFPAITICNLNQALLSKVDRIGRTSTNFSLLMGLCDQGGDT
TISYIGTWKYFKAILVDVAQPCEKMLLYCSFGSREEDCSWLFTSILTDDG
LCCNFNALHPSYLIRNYSDDVRLETAHPNTRYELIDWTPEKGYARNLPEF
YFPRTSGGTGIRMGLTVVLNASIAEYYCTKSMSVGFKVLVHNPAELPKVS
NYGFVVTAGREARIPIEPVYEDALPTIRSIKKSVRRCLFSDENDLAYYRT
YSRKNCELECEAKLLLRECSCVLYYLPRIDPLARVCGPNDNQCTDRVQTE
IESSLTNLSCENCWPGCFELTYRATLSTASIVSDPRFQAGENLPEYIFHG
PYSNASEISILHFYYMTNIFRSTTKSEMFGFTEFLSNTGGLLGLFMGFSI
FSVIEIFFYITVRPYCASRTLRQRHKRRLEQLSWLTPIRMPVRRALRRNR
GGLLRNPPPPAYSDLQKFRGKLDKPETCKRKLWRTLQVRPVVDRADEELP
TYPYLDASFLDH

BO33913.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
ppk28-PA 606 CG4805-PA 1..606 1..606 3207 100 Plus
ppk12-PA 569 CG10972-PA 24..504 38..514 885 38.1 Plus
ppk8-PH 569 CG32792-PH 32..532 33..533 827 32 Plus
ppk5-PB 474 CG33289-PB 4..462 52..510 755 33.5 Plus
ppk5-PC 405 CG33289-PC 4..377 52..422 667 34.9 Plus