Clone BO33916 Report

Search the DGRC for BO33916

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:339
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptSr-CIV-RA
Protein status:BO33916.pep: Imported from assembly
Sequenced Size:1252

Clone Sequence Records

BO33916.complete Sequence

1252 bp assembled on 2013-05-17

GenBank Submission: KX799268

> BO33916.complete
GAAGTTATCAGTCGACATGATATTGCTCTGGGCGATCGTTCTTATATCGA
GTGTGGATCGAACAAATGCTCGATGTCTAGAATCTGTGCACTTGGAACAC
GGTTCGACGGAAATAGTAAATGGATCCATTATTTTTCATTGCGATCAAGG
ATACTTTCTACAAGGATCGAAAGTGTTCACCTGCGATCGCGGTATTCCTC
GAGGGAAAAAACCATTTTGCGCCAAAAGCGGTTGCCAGGAATACGAACAA
ATACAGAACGGATTTGTTTTAAATGCTCCTATGAAAGCTAAGATCATATG
TTCGGATGGCCATGGGTTGGTTGGAAATCGCATTGCCTATTGCGATGGCG
AGAAGTGGAGCACCCAGTTGGGATCCTGCGCATTAAGACGCCAGACGATC
GATGTTTCCTGTGATTTCGAGAGCGAGGATATGTGCGGCTGGACGGCGGA
ATTGAGCTTCTTGGGAACTTGGAAACGGGTCAGTACGGTGGCCGACTTTC
ACTCTGAGAAAACGGGTCCCCAAAAAGATCACACGTTCCAAAACCAATCC
ATCGGACACTACGTGCGCATGGAGACGGAAAGCGATGCTTTTGGAACCTA
CCACTTCCTATCGCCACTGTATCCCAAGGAGCTCAGTTTGAGTGGCGCCT
GCTTCCAGTTTCACTACTTCATGTTCGGCAGCGGAGTGGGTAGCCTGCTG
GTGTCCATAAAACCCGTTTCGGTGACTATAGGAGACATATTTAAAACAAA
CCATCCCTACAAGTTCGACCAATTCGTGATGACTGGATCACAAGGTGCCA
GGTGGCTGGAGCACACGATCGATATCAATAAGATGGATGAGGACTTCCAA
GTGATCTTTACCGCCACGGATGCGAGGTCCCAATACGGAGATATTGCCAT
CGACGACGTGAAGCTGATGGCAGCTAAGGAATGTGCCAGGAGGTCTACCT
TCATCGAGGAACCAAAAAAACCAATAGAAGAATCGGATATCACGGATTCA
CTGGGCTACCAAATGACCGACTGCTCTGGTCGTTGTGGTCAGGACTTTGT
TCGGGGAAGGTACATCAATGAAGGGTGTCGATGCCAAGAATCATGTCTGG
TGAACGGCAATTGTTGCCTAAATTATGTCAAGGAGTGCCATAAAGATCTG
GTCATAGCTCCGTATAATGAACTCAAATTCTGGAGGCTTTGGAATCTTTG
GAGCGGTGATAGTAATGTGACTGTCGTACCTAAAGCAAGCTTTCTAGACC
AT

BO33916.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Sr-CIV-RA 1221 CG3212-PA 1..1218 17..1234 6075 99.9 Plus
Sr-CII-RB 1800 CG8856-PB 319..915 323..919 320 71 Plus
Sr-CII-RA 1800 CG8856-PA 319..915 323..919 320 71 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Sr-CIV-RA 1390 CG3212-RA 97..1314 17..1234 6075 99.9 Plus
Sr-CII-RB 2369 CG8856-RB 745..1341 323..919 320 71 Plus
Sr-CII-RA 2043 CG8856-RA 419..1015 323..919 320 71 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3523144..3523672 753..225 2630 99.8 Minus
2L 23513712 2L 3522597..3523077 1234..754 2405 100 Minus
2L 23513712 2L 3523753..3523960 224..17 1040 100 Minus
2R 25286936 2R 12209992..12210108 919..803 285 82.9 Minus
2L 23513712 2L 4122126..4122545 305..721 280 71.7 Plus
2L 23513712 2L 4122748..4122869 802..923 265 81.1 Plus
2R 25286936 2R 12210313..12210699 706..323 265 71.8 Minus
Blast to na_te.dros performed on 2014-11-28 13:38:03 has no hits.

BO33916.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-17 15:32:14 Download gff for BO33916.complete
Subject Subject Range Query Range Percent Splice Strand
Sr-CIV-RA 1..1218 17..1236 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:10:45 Download gff for BO33916.complete
Subject Subject Range Query Range Percent Splice Strand
Sr-CIV-RA 97..1314 17..1236 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:42 Download gff for BO33916.complete
Subject Subject Range Query Range Percent Splice Strand
Sr-CIV-RA 97..1314 17..1236 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:42 Download gff for BO33916.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3522595..3523077 754..1236 99 <- Minus
2L 3523144..3523672 225..753 99 <- Minus
2L 3523753..3523960 17..224 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:10:45 Download gff for BO33916.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3522595..3523077 754..1236 99 <- Minus
arm_2L 3523144..3523672 225..753 99 <- Minus
arm_2L 3523753..3523960 17..224 100   Minus

BO33916.pep Sequence

Translation from 16 to 1252

> BO33916.pep
MILLWAIVLISSVDRTNARCLESVHLEHGSTEIVNGSIIFHCDQGYFLQG
SKVFTCDRGIPRGKKPFCAKSGCQEYEQIQNGFVLNAPMKAKIICSDGHG
LVGNRIAYCDGEKWSTQLGSCALRRQTIDVSCDFESEDMCGWTAELSFLG
TWKRVSTVADFHSEKTGPQKDHTFQNQSIGHYVRMETESDAFGTYHFLSP
LYPKELSLSGACFQFHYFMFGSGVGSLLVSIKPVSVTIGDIFKTNHPYKF
DQFVMTGSQGARWLEHTIDINKMDEDFQVIFTATDARSQYGDIAIDDVKL
MAAKECARRSTFIEEPKKPIEESDITDSLGYQMTDCSGRCGQDFVRGRYI
NEGCRCQESCLVNGNCCLNYVKECHKDLVIAPYNELKFWRLWNLWSGDSN
VTVVPKASFLDH

BO33916.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
Sr-CIV-PA 406 CG3212-PA 1..406 1..406 2211 100 Plus
Sr-CI-PB 629 CG4099-PB 8..393 6..386 1021 50.5 Plus
Sr-CI-PA 629 CG4099-PA 8..393 6..386 1021 50.5 Plus
Sr-CII-PB 599 CG8856-PB 5..391 3..380 985 49.9 Plus
Sr-CII-PA 599 CG8856-PA 5..391 3..380 985 49.9 Plus