BO33930.complete Sequence
1080 bp assembled on 2013-04-19
> BO33930.complete
GAAGTTATCAGTCGACATGAGCATATACAGCACGCTGATCCTTCTTTTGA
CAATAGTCTCCGGTTTCTGCAAAGGAGAAAATCATACGCGTGGCTGGCTG
CCAGAGTTCTGTGTCGTCGGCGAGCAAAAGTGTCCCAACTCGCGAGTTTC
GTTTTGGCTTTACACCAACCAAACACGCGACGATCCCATACAATTAGATC
CTTTGAATCCGCAAAAGGATGTCTTCCAGCCGCGTCTGCCACTCAAGATA
CTCATCCATGGATTTATAGGCAACAGGAACTTGACACCCAATTTGGAAGT
TAGAGATGTGCTGCTCCAAACTCAGCCTATAAATGTGATATCGGTGGACT
ATGGGACATTGGTTCGATGGCCGTGCTATTATCCTTGGGCTGTGAATAAT
GCACCAATTGTTTCTGAGTGTCTGGCCCAGATGATAAATAATCTAATCTC
AGCTGGCATCAGCAGACGTGAAGATATTCACTTGATAGGCTTCAGTTTGG
GAGCACAAGTGGCTGGAATGGTGGCCAACTATGTGAGCCAACCTCTGGCC
AGGATTACTGGACTGGATCCTGCGGGTCCTGGCTTTATGATGCAGCCCTC
CTTGCAGCAAAAACTGGATGCCAGTGATGCCGACTTTGTGGACATCATAC
ACACCGATCCGTTCTTCTTCTCGATGCTGCCGCCAATGGGTCATGCAGAC
TTTTACCCCAATCTCGACCAGCTTAATCAGCGGGGATGCAGTTACATCAG
CAACTGGAGATTTTACAACTGCAATCATTATCGGGCAGCCGTATACTACG
GCGAATCAATAATCTCGGAGAGGGGTTTTTGGGCCCAGCAATGCGGTGGA
TGGTTCGATTTCTTCTCGCAGCGGTGCAGCCACTACTCCAATATGCCCAA
TACGCAAATGGGTTACTTTGTCTCAGAAGATGCGTCTGGCTCGTACTTTC
TCACCACCCATGAGGTTGCTCCTTTTGCCAAAGGACCTCTGGTTGAAGTC
GAATTTGACGTTTCGGAACTTCGAAATTTTACGGAAATAGAATTAAGAGC
AAGCTTTCTAGACCATTCGTGTGGCGTAAA
BO33930.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34448-RA | 1035 | CG34448-PA | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34448-RA | 1052 | CG34448-RA | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2416990..2417751 | 930..169 | 3810 | 100 | Minus |
| 2L | 23513712 | 2L | 2417814..2417966 | 168..16 | 765 | 100 | Minus |
| 2L | 23513712 | 2L | 2416812..2416929 | 1048..931 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:19:17 has no hits.
BO33930.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:17:58 Download gff for
BO33930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34448-RA | 1..1035 | 17..1051 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:32 Download gff for
BO33930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34448-RA | 1..1036 | 17..1052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:26:07 Download gff for
BO33930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34448-RA | 1..1036 | 17..1052 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:26:07 Download gff for
BO33930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2416807..2416929 | 931..1052 | 98 | <- | Minus |
| 2L | 2416990..2417751 | 169..930 | 100 | <- | Minus |
| 2L | 2417814..2417965 | 17..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:32 Download gff for
BO33930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2416807..2416929 | 931..1052 | 98 | <- | Minus |
| arm_2L | 2416990..2417751 | 169..930 | 100 | <- | Minus |
| arm_2L | 2417814..2417965 | 17..168 | 100 | | Minus |
BO33930.pep Sequence
Translation from 16 to 1078
> BO33930.pep
MSIYSTLILLLTIVSGFCKGENHTRGWLPEFCVVGEQKCPNSRVSFWLYT
NQTRDDPIQLDPLNPQKDVFQPRLPLKILIHGFIGNRNLTPNLEVRDVLL
QTQPINVISVDYGTLVRWPCYYPWAVNNAPIVSECLAQMINNLISAGISR
REDIHLIGFSLGAQVAGMVANYVSQPLARITGLDPAGPGFMMQPSLQQKL
DASDADFVDIIHTDPFFFSMLPPMGHADFYPNLDQLNQRGCSYISNWRFY
NCNHYRAAVYYGESIISERGFWAQQCGGWFDFFSQRCSHYSNMPNTQMGY
FVSEDASGSYFLTTHEVAPFAKGPLVEVEFDVSELRNFTEIELRASFLDH
SCGV
BO33930.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34448-PA | 344 | CG34448-PA | 1..344 | 1..344 | 1864 | 100 | Plus |
| CG34447-PA | 389 | CG34447-PA | 3..353 | 5..349 | 737 | 45.5 | Plus |
| CG34447-PB | 389 | CG34447-PB | 3..353 | 5..349 | 737 | 45.5 | Plus |
| CG14034-PC | 338 | CG14034-PC | 33..311 | 39..323 | 531 | 41.8 | Plus |
| CG14034-PB | 338 | CG14034-PB | 33..311 | 39..323 | 531 | 41.8 | Plus |
