BO33934.complete Sequence
1090 bp assembled on 2013-04-19
GenBank Submission: KX793779
> BO33934.complete
GAAGTTATCAGTCGACATGGATATGATGACAGCTACGTGGATGCTGTGTC
TTGTTCTCTGCTCCACGGCGATGGCGACGGAGGAGGAATCGGGCAGTGGA
CTGTTCAACGTCACCGGGAATCCCTTGGATACAGAAGCTGCTCCAAAACT
GCCCAGCGAAGTGCAGAAAGCTGTTTGCACTGTGACTGCGGGGGAGGTGA
AGGCATCTGCCGAGGCTGTCACCACAAAAACCCTTAAGGGAGTGTGTGGA
TCAGATGAAATGAACATGGCCTTCCGAAGTCTGGAGAACAAGCTCTACGA
AGAGCTTCGTGTAATGAAACTGATTTTGGTGCACTTAGCCAAGGCGAATG
GACTTAAGCTCAATACAGCCTTTTCCCCATCTGTGACCACTCCACCTCCG
ACTATGAGGCCAATCACTAGCGCTGCGGTGCCGCCAATCTTCAAGCCAAT
TGATCCTCCCAAGAAGCTTTCCAATTCCACCAATTCGAAAGCCGAAGAGA
ACGAAGTTGCTCCAGACTTCGGACTTAAGAAGACTCCTACTCTGAAAAAC
TTGGATTCGAACGCAAATCTTGGAGCTCGTGAAAATGAAGTCGATAAGTT
CAATAATACTGTACTGGCCGATCAGGATGTAAAGTTGTTCACTTACTATT
GGAAGTTGGAGAACGTTACGGAACTTATCAAAGCACCTAAATTGGCCACT
GTCAGTAGTCCGATATTCAGCTTTAAAGGCAAGTCCCTGCAACTAAAGTG
CACTTTCCATCACATGAATCGCGAACTGCTGAACCTGCAACTGGGATACG
GCGTCTTTAACCCAAAATCTAAAACTGGCCAAAGCAACAACATCTTGTTA
GAAATGGACGGAATTTTCCAGAACACTAAGTGGACCGAAGATATCCAGCT
GAAGCACAAGATTTCCATACTGGATCAAAGTCACACCCAACGAAGAACGC
AAGATCTCAGTTCACAGGTGCTGAACAAGCTGGACACGGGTTTCTCTATC
CCAAACAGTGTGCTCCTCGGTAGCTCTTACATCAAGCAGAACGCGCTGTT
GATCCAAATTCTTTTATATTTGGCAAGCTTTCTAGACCAT
BO33934.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:19:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13247-RA | 1005 | CG13247-PA | 1..1002 | 71..1072 | 5010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13247-RA | 1305 | CG13247-RA | 200..1255 | 17..1072 | 5280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:19:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20370807..20371284 | 252..729 | 2390 | 100 | Plus |
| 3L | 28110227 | 3L | 20371347..20371696 | 723..1072 | 1735 | 99.7 | Plus |
| 3L | 28110227 | 3L | 20370512..20370749 | 17..254 | 1190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:19:08 has no hits.
BO33934.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:16:34 Download gff for
BO33934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13247-RA | 1..1002 | 71..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:28 Download gff for
BO33934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13247-RA | 200..1255 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:26:04 Download gff for
BO33934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13247-RA | 200..1255 | 17..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:26:04 Download gff for
BO33934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20370512..20370749 | 17..254 | 100 | -> | Plus |
| 3L | 20370810..20371283 | 255..728 | 100 | -> | Plus |
| 3L | 20371353..20371696 | 729..1074 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:28 Download gff for
BO33934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20363612..20363849 | 17..254 | 100 | -> | Plus |
| arm_3L | 20363910..20364383 | 255..728 | 100 | -> | Plus |
| arm_3L | 20364453..20364796 | 729..1074 | 99 | | Plus |
BO33934.pep Sequence
Translation from 16 to 1090
> BO33934.pep
MDMMTATWMLCLVLCSTAMATEEESGSGLFNVTGNPLDTEAAPKLPSEVQ
KAVCTVTAGEVKASAEAVTTKTLKGVCGSDEMNMAFRSLENKLYEELRVM
KLILVHLAKANGLKLNTAFSPSVTTPPPTMRPITSAAVPPIFKPIDPPKK
LSNSTNSKAEENEVAPDFGLKKTPTLKNLDSNANLGARENEVDKFNNTVL
ADQDVKLFTYYWKLENVTELIKAPKLATVSSPIFSFKGKSLQLKCTFHHM
NRELLNLQLGYGVFNPKSKTGQSNNILLEMDGIFQNTKWTEDIQLKHKIS
ILDQSHTQRRTQDLSSQVLNKLDTGFSIPNSVLLGSSYIKQNALLIQILL
YLASFLDH
BO33934.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13247-PA | 334 | CG13247-PA | 1..334 | 19..352 | 1700 | 100 | Plus |
