Clone BO33935 Report

Search the DGRC for BO33935

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:339
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG13050-RA
Protein status:BO33935.pep: Imported from assembly
Sequenced Size:463

Clone Sequence Records

BO33935.complete Sequence

463 bp assembled on 2013-04-19

GenBank Submission: KX796435

> BO33935.complete
GAAGTTATCAGTCGACATGAAAGGACTGCTACTCATTACAATCGCCTGCT
TGACGACCTCCATCCTGGCAGCTCCTGCTCCTGAACCCGCTCCAGAACCA
TCTCCGTCTCCAGCTCCTGCTCCATCTCCATCACCCAGCATTGGAATCGG
AATTGGTCATGGCTACGGTGGATATGGCCTGGGATTGGGTCTAGGAATCG
GGCACTACGGAGGACTCTACGGGCACGGCTATGGCGGGCACTATGGAGGT
CTTGGTCTGGGATTGGGCTACCATGCACCCATCATCTCCAAGACGATCAT
CGGCAAAAGCTACTTGGGCGGCTATGGCTATGGCCTCGGTCACGGATATC
TCGGAGGCTACGGCCATGGACTGTACGGAGGACACGGTCTGGGTCTGGGT
CTGGGTCTGGGATACGGACTGGGATATGGCTATGGCCACGGTTGGGCAAG
CTTTCTAGACCAT

BO33935.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13050-RA 432 CG13050-PA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13050-RA 694 CG13050-RA 63..491 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16278661..16279080 445..26 2100 100 Minus
Blast to na_te.dros performed on 2014-11-28 13:19:12 has no hits.

BO33935.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:16:54 Download gff for BO33935.complete
Subject Subject Range Query Range Percent Splice Strand
CG13050-RA 1..429 17..447 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:29 Download gff for BO33935.complete
Subject Subject Range Query Range Percent Splice Strand
CG13050-RA 63..491 17..447 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:26:05 Download gff for BO33935.complete
Subject Subject Range Query Range Percent Splice Strand
CG13050-RA 63..491 17..447 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:26:05 Download gff for BO33935.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16278659..16279086 17..447 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:29 Download gff for BO33935.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16271759..16272186 17..447 98   Minus

BO33935.pep Sequence

Translation from 16 to 463

> BO33935.pep
MKGLLLITIACLTTSILAAPAPEPAPEPSPSPAPAPSPSPSIGIGIGHGY
GGYGLGLGLGIGHYGGLYGHGYGGHYGGLGLGLGYHAPIISKTIIGKSYL
GGYGYGLGHGYLGGYGHGLYGGHGLGLGLGLGYGLGYGYGHGWASFLDH

BO33935.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13050-PA 143 CG13050-PA 1..143 1..143 806 100 Plus
CG2157-PA 245 CG2157-PA 70..171 43..145 192 47.2 Plus
CG2157-PB 247 CG2157-PB 70..173 43..145 188 46.3 Plus
CG5070-PA 209 CG5070-PA 47..197 43..145 182 37.3 Plus
CG15597-PB 149 CG15597-PB 28..128 56..145 177 47.6 Plus