BO33938.complete Sequence
859 bp assembled on 2013-04-19
GenBank Submission: KX795239
> BO33938.complete
GAAGTTATCAGTCGACATGGCTGATCCGAACGCAGAGTCCTGCTGCCAGC
CCCTAAAGGAGGAGTTTCAGCGGTCAAAATTCTCGCTGCACCATGAAGAT
CCTGGTGTCTTCTGCCGATCACAATGGCAGAACGGAGAGCGGAATTTAAT
CTGGGTTCTATACCGATGGCTTCTGGCTGCTTTCTTTGCCGCTGGAGTCA
TTGGCAGCATGATGCAGGATTTCAATGGCGGTCGATGGTTTATTTATCTC
ACGGATTGGGGATTTACACTGTGTCTATTTACCTGCACTTACGGGGCTGT
AATCGCTACTATTTACTACTTCAATCAATCTTATTTTGCTCCCGGACATT
GTGCTCTGAAAATTTACTGGATCTCACACTACACCACTTCGGTACTATCC
ATGTTGATTACCACCGTCTTCTGGGCAGCTCTATCATTAACCATGCCAGA
AGTGGCAGGTGAGCTTTACAACTTGTGGTGCCATGCATTCAACTCGATCT
GCATGGTCTTCGACTGCTTTATGGTGGCTTATCCTAACCGTCTTATGCAC
TTTGTGTATCCCTTTTCGGTGGTGCTCATATTCTTGATGCATTCCCTTAT
TTACTATTGGGCCGGCGGAACCGACATCGACGGAAATCGCTTCATCTACT
TCGCCCTGGACTGGGCTCGACCTGGTCTGGCGATTGGATTCGTTTGCGCG
AGTTTGGCATTGATCTGTTGCTTTTCCCTCGTGGCCTTTGGAATTTACAG
GTTGCGGATGTCAGTGTACAACTGTTGTGGCAAAAGGAAGGAGGAAGCAC
CAGCCTTAAAAGCTACGCCCAATGAATCATCTCCAACTGTTGCAAGCTTT
CTAGACCAT
BO33938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17906-RA | 828 | CG17906-PA | 1..825 | 17..841 | 4125 | 100 | Plus |
| CG9555-RC | 828 | CG9555-PC | 28..549 | 44..565 | 735 | 76.1 | Plus |
| CG9555-RA | 828 | CG9555-PA | 28..549 | 44..565 | 735 | 76.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17906-RA | 971 | CG17906-RA | 73..897 | 17..841 | 4125 | 100 | Plus |
| alien-RD | 3172 | CG9556-RD | 2206..2527 | 338..17 | 1610 | 100 | Minus |
| alien-RD | 3172 | CG9556-RD | 1452..1660 | 836..628 | 1045 | 100 | Minus |
| alien-RB | 2321 | CG9556-RB | 1452..1660 | 836..628 | 1045 | 100 | Minus |
| alien-RD | 3172 | CG9556-RD | 1715..1905 | 627..437 | 940 | 99.5 | Minus |
| alien-RD | 3172 | CG9556-RD | 1964..2066 | 440..338 | 515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:19:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8994463..8994784 | 17..338 | 1610 | 100 | Plus |
| 2L | 23513712 | 2L | 8995330..8995543 | 628..841 | 1070 | 100 | Plus |
| 2L | 23513712 | 2L | 8995085..8995275 | 437..627 | 940 | 99.5 | Plus |
| 2L | 23513712 | 2L | 8994924..8995026 | 338..440 | 515 | 100 | Plus |
| 2L | 23513712 | 2L | 8992090..8992384 | 44..338 | 440 | 76.6 | Plus |
| 2L | 23513712 | 2L | 8992850..8992974 | 441..565 | 265 | 80.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:19:27 has no hits.
BO33938.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:19:14 Download gff for
BO33938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17906-RA | 1..825 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:36 Download gff for
BO33938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17906-RA | 1..825 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:26:10 Download gff for
BO33938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17906-RA | 73..897 | 17..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:26:10 Download gff for
BO33938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8995089..8995275 | 441..627 | 100 | -> | Plus |
| 2L | 8995330..8995543 | 628..843 | 99 | | Plus |
| 2L | 8994463..8994784 | 17..338 | 100 | -> | Plus |
| 2L | 8994925..8995026 | 339..440 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:36 Download gff for
BO33938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8994463..8994784 | 17..338 | 100 | -> | Plus |
| arm_2L | 8994925..8995026 | 339..440 | 100 | -> | Plus |
| arm_2L | 8995089..8995275 | 441..627 | 100 | -> | Plus |
| arm_2L | 8995330..8995543 | 628..843 | 99 | | Plus |
BO33938.pep Sequence
Translation from 16 to 859
> BO33938.pep
MADPNAESCCQPLKEEFQRSKFSLHHEDPGVFCRSQWQNGERNLIWVLYR
WLLAAFFAAGVIGSMMQDFNGGRWFIYLTDWGFTLCLFTCTYGAVIATIY
YFNQSYFAPGHCALKIYWISHYTTSVLSMLITTVFWAALSLTMPEVAGEL
YNLWCHAFNSICMVFDCFMVAYPNRLMHFVYPFSVVLIFLMHSLIYYWAG
GTDIDGNRFIYFALDWARPGLAIGFVCASLALICCFSLVAFGIYRLRMSV
YNCCGKRKEEAPALKATPNESSPTVASFLDH
BO33938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17906-PA | 275 | CG17906-PA | 1..275 | 1..275 | 1523 | 100 | Plus |
| CG9555-PC | 275 | CG9555-PC | 1..275 | 1..275 | 1094 | 68.7 | Plus |
| CG9555-PA | 275 | CG9555-PA | 1..275 | 1..275 | 1094 | 68.7 | Plus |
| CG4480-PC | 272 | CG4480-PC | 23..271 | 13..256 | 496 | 36.9 | Plus |
| CG4480-PB | 272 | CG4480-PB | 23..271 | 13..256 | 496 | 36.9 | Plus |
