Clone BO33940 Report

Search the DGRC for BO33940

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:339
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG13869-RA
Protein status:BO33940.pep: Imported from assembly
Sequenced Size:679

Clone Sequence Records

BO33940.complete Sequence

679 bp assembled on 2013-04-22

GenBank Submission: KX796313

> BO33940.complete
GAAGTTATCAGTCGACATGAACCTTTTGGCGAAAATCATACTGTTCCTTT
TCACTCTCGAGGCTGTGAGTGCTTTAGAGGCCAATCTCACTTCGTGGCGA
CATCACAGAAGGCAAAAGCGGTTCCTGATTTATCAGAATGGCGGTGTAAT
CAAGTTCGTTTCGGGATGTGCATTTCCGGCTCCGTTTATGGAGAAAAAGG
CATGGCGCCAGTTGGTTTGGCTGATGAACTTTCACTATCAGTTCAATGAG
CCGCAAACTCCAATCTACTGGTGGAAACTTTGGGATGGCTCCCGAAATCT
CAAGGGACCATTGACCCAACCTGCTCCTCCATCCGTTCCAGCTCGTCTTT
TGGTGGACGAGCCTCAACTTCTGCTATTCAAGTTCGCCGAGGCCTATATG
AACCAGTTGGGTCAAAATGGTAGTGCCTGTCTGGATCGTCTGATCTGCGA
GAATGGTCAGGTGGATGAGCATAGTGGACTCTACGCCCAACTGCTCCACA
GGTTGTTAAGACCTCATCAAACGCTGGACGTGAGATATTTGGATGCCTAC
AGGATGGGTCGCCATGGCGTTGACTGCCGAAATGCCTTTCCAGAGGCCCA
TCATTGCATTTTGGATGACTACCTACACCTCCATGAGCGAGGACCGAAAC
AGAGTTTTCTTGCAAGCTTTCTAGACCAT

BO33940.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13869-RA 648 CG13869-PA 1..645 17..661 3225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13869-RA 753 CG13869-RA 29..675 15..661 3235 100 Plus
CG11099-RB 2173 CG11099-RB 1751..2108 510..153 1790 100 Minus
CG11099-RA 2319 CG11099-RA 1897..2254 510..153 1790 100 Minus
CG11099-RB 2173 CG11099-RB 1546..1698 661..509 765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20238778..20239135 510..153 1790 100 Minus
2R 25286936 2R 20238573..20238725 661..509 765 100 Minus
2R 25286936 2R 20239197..20239323 154..28 635 100 Minus
Blast to na_te.dros performed on 2014-11-28 13:30:34 has no hits.

BO33940.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-22 16:48:19 Download gff for BO33940.complete
Subject Subject Range Query Range Percent Splice Strand
CG13869-RA 1..645 17..663 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:24 Download gff for BO33940.complete
Subject Subject Range Query Range Percent Splice Strand
CG13869-RA 31..675 17..663 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:28:58 Download gff for BO33940.complete
Subject Subject Range Query Range Percent Splice Strand
CG13869-RA 31..675 17..663 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:28:58 Download gff for BO33940.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20238569..20238723 511..663 98 <- Minus
2R 20238778..20239133 155..510 100 <- Minus
2R 20239197..20239323 28..154 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:24 Download gff for BO33940.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16126074..16126228 511..663 98 <- Minus
arm_2R 16126283..16126638 155..510 100 <- Minus
arm_2R 16126702..16126828 28..154 100   Minus

BO33940.pep Sequence

Translation from 16 to 679

> BO33940.pep
MNLLAKIILFLFTLEAVSALEANLTSWRHHRRQKRFLIYQNGGVIKFVSG
CAFPAPFMEKKAWRQLVWLMNFHYQFNEPQTPIYWWKLWDGSRNLKGPLT
QPAPPSVPARLLVDEPQLLLFKFAEAYMNQLGQNGSACLDRLICENGQVD
EHSGLYAQLLHRLLRPHQTLDVRYLDAYRMGRHGVDCRNAFPEAHHCILD
DYLHLHERGPKQSFLASFLDH

BO33940.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13869-PA 215 CG13869-PA 1..215 1..215 1177 100 Plus
CG14829-PB 219 CG14829-PB 31..213 23..202 238 33.3 Plus
CG14826-PC 219 CG14826-PC 25..208 23..196 224 32.6 Plus
CG14826-PA 219 CG14826-PA 25..208 23..196 224 32.6 Plus
CG33342-PB 219 CG33342-PB 15..202 8..193 198 29.5 Plus