BO33946.complete Sequence
1129 bp assembled on 2013-05-17
GenBank Submission: KX794535
> BO33946.complete
GAAGTTATCAGTCGACATGTTACCCTCTTGCTATGCCAATGGATCGATGC
TGCCGGATAATGAGGAGCTGGTCAACTCCATGCTAGCGAATCCGGATTAT
CTCAGGACCCAGGTGTCACCCAATCCGCTGGCTCCAAGTGCCGTCGGAGG
TGCGGGCATGGAGGGTCTGATGTGCGGATCGTTTTCACCGGCCTTCTACT
ACCAGGGCATCGATAGCTTTCTGGCCCTGCACAACAACATCTGGGGATTG
CCTATATCCTTTCTGCACAACTCCCATCGACCGGAAAAGCCTCCTTTCTC
CTACATTGCCCTCATCGCCATGGCCATCAGCAGTGCACCCAACCAGCGAC
TGACCCTCAGTGGAATCTACAAGTTTATCATGGATAAATTCCCATATTAC
AGGGAGAACAAGCAGGGCTGGCAGAACTCCATTCGCCACAATCTGTCCCT
CAACGACTGCTTCGTGAAGATTCCGCGGGACAAGAACACAATCGAGGATA
ACGACAGTGCTGGGAAGGGAAGCTACTGGATGCTGGACTCATCGGCATCG
GACATGTTCGAACAGGGAAACTACCGCCGGAGGAGAACGCGCAGGCAGAG
GCACTGTGGCCATCCAAATCGCTACGAGAGGGAATCGGGAAAGGATTCAA
ATGATGGCAACAGTAGTGCAGCAGAGATTCGCTCGCCCAGCGAACCGCTG
AGTGACTTCGATATCTTCTGCAACGAGCGGCCCAATTACTCCGACAGGAT
TACGGATCTGCACAGGCAGTACTTGTCCGTATCCCTGGGCTTCAACAGTC
TGTTCAACAACGAGGCCCGCGGACTCCGACCACTGCCCGAGATCAGGGAA
TGCCCAGACGATGTGGACGCCTCGTCCAGTTCCAGCAAAGCAATGCAAAG
TTCCATGGAACTGCACGAGGAGCTACATTCGCCGAGCGCCTTTACTCCTC
CTCTCAATCGACGGGAAACCTCGTCATCGGGTGCACCTGTCCTTGCCGAA
GCTTTTAATGGCATCAAGGATGTGGTGGATGCACCTGGGAGCAGTCCAGT
GGCCAGCAGCAACCGATCAAAGACCACGCTGTTTACCATCGACAATATCA
TTGGCAAGCCAGCAAGCTTTCTAGACCAT
BO33946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd64A-RB | 1098 | CG1132-PB | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| fd64A-RA | 1098 | CG1132-PA | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| croc-RA | 1527 | CG5069-PA | 207..390 | 286..469 | 290 | 77.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd64A-RB | 1414 | CG1132-RB | 217..1311 | 17..1111 | 5475 | 100 | Plus |
| fd64A-RA | 1372 | CG1132-RA | 175..1269 | 17..1111 | 5475 | 100 | Plus |
| croc-RA | 2347 | CG5069-RA | 492..675 | 286..469 | 290 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:37:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4020707..4021176 | 642..1111 | 2350 | 100 | Plus |
| 3L | 28110227 | 3L | 4019094..4019464 | 17..387 | 1855 | 100 | Plus |
| 3L | 28110227 | 3L | 4020397..4020653 | 388..644 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 21475805..21475988 | 469..286 | 290 | 77.2 | Minus |
| 2L | 23513712 | 2L | 3826238..3826328 | 384..474 | 230 | 83.5 | Plus |
| 3R | 32079331 | 3R | 28583739..28583848 | 474..365 | 190 | 78.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:37:25 has no hits.
BO33946.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-17 15:32:01 Download gff for
BO33946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd64A-RA | 6..1095 | 22..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:10:28 Download gff for
BO33946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd64A-RA | 180..1269 | 22..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:26 Download gff for
BO33946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd64A-RA | 180..1269 | 22..1113 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:26 Download gff for
BO33946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4019099..4019464 | 22..387 | 100 | -> | Plus |
| 3L | 4020397..4020652 | 388..643 | 100 | -> | Plus |
| 3L | 4020709..4021176 | 644..1113 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:10:28 Download gff for
BO33946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4019099..4019464 | 22..387 | 100 | -> | Plus |
| arm_3L | 4020397..4020652 | 388..643 | 100 | -> | Plus |
| arm_3L | 4020709..4021176 | 644..1113 | 99 | | Plus |
BO33946.pep Sequence
Translation from 16 to 1129
> BO33946.pep
MLPSCYANGSMLPDNEELVNSMLANPDYLRTQVSPNPLAPSAVGGAGMEG
LMCGSFSPAFYYQGIDSFLALHNNIWGLPISFLHNSHRPEKPPFSYIALI
AMAISSAPNQRLTLSGIYKFIMDKFPYYRENKQGWQNSIRHNLSLNDCFV
KIPRDKNTIEDNDSAGKGSYWMLDSSASDMFEQGNYRRRRTRRQRHCGHP
NRYERESGKDSNDGNSSAAEIRSPSEPLSDFDIFCNERPNYSDRITDLHR
QYLSVSLGFNSLFNNEARGLRPLPEIRECPDDVDASSSSSKAMQSSMELH
EELHSPSAFTPPLNRRETSSSGAPVLAEAFNGIKDVVDAPGSSPVASSNR
SKTTLFTIDNIIGKPASFLDH
BO33946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd64A-PB | 365 | CG1132-PB | 1..365 | 1..365 | 1933 | 100 | Plus |
| fd64A-PA | 365 | CG1132-PA | 1..365 | 1..365 | 1933 | 100 | Plus |
| croc-PA | 508 | CG5069-PA | 63..165 | 84..192 | 353 | 58.7 | Plus |
| fd96Ca-PB | 372 | CG11921-PB | 8..112 | 86..196 | 333 | 57.7 | Plus |
| fd96Ca-PA | 372 | CG11921-PA | 8..112 | 86..196 | 333 | 57.7 | Plus |
