Clone BO33948 Report

Search the DGRC for BO33948

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:339
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG15545-RA
Protein status:BO33948.pep: Imported from assembly
Sequenced Size:1108

Clone Sequence Records

BO33948.complete Sequence

1108 bp assembled on 2013-05-23

GenBank Submission: KX796441

> BO33948.complete
GAAGTTATCAGTCGACATGAAAGTGTGCTGGAATTTCTTTGCTGCGGCGG
TGCTGTTAGTGACGGTCACCTCGGGGCTGAGACCCCCACGATCCTACTAT
CGGAGGAGCTACTTCAGTGCAGTGGGTTCAGGATCTGGGCACGCACCCAG
CTCTCTGCCAGGACCAGTGAGAATAGGACCCGCTAGTTACTTCCGTGCCG
ATCTGCAAACAAATGAGAGCAAGCACCGGCCACTGAGCAAAAAGTATCCC
AAGAAGAGCCACTACAGACCCTACGGATCGCAAGAGGAAGAGGACGAACA
ACGCTACAATTCCGCGGAATATTCAGGAGAGTCCTCCGTTCAGGATAGTC
GGGAATACACGATTGGCACCCAAATTCGCGTCCAGCATCCCATAACCGTG
CCCAAGAAGTCCAGTTCCGGCTACCAGAAGCAGCCAAAATATGTGACGGC
CATTCCATACAAGGCATCTGGTTATGGATCCGATATCCACAAGCCCTCCG
GTTATGGATCCGATGTTCATATTGGATCTGGAGAGGATGTTGGACCTCCT
CCGAAAAGATCGAAGTGGACCCCAGTGCAATACGAATCGGAAGCCGATCC
CTTCCATCTAGTGCCACCTCCAAAGGCAACCGTCGCCTCCAGCAGCAACT
CATATAGTGTTTATGAGCCCGAACACGATGACTACGAGGTGGTTCCAGTG
CCCCGACCAAAAAGCCACGATCGCTACAAAAGCGTCGCCTCCAAGAAACA
AGTAGAGGCCTACCTAGAGGATCAGCAGAAGCTGCTCGACGAGGCCATCA
AAGTTCAGCTTTTGAACAATCCGAAGCTGCAAAAATTCTTCAAGGCCCAG
GCGCAGGAACAGGAGCGGGAATCGCGGCCAGACCTCGAAATCGAGGATTT
TGAGGCCTATCCGCCCAACTTTTCGGGGCCCGGACACCTGCGCAACAAGT
ACATCGAACACCCACCATCTTCTCCGCCGAAGGGATCTCGATCACGCCGG
CGTCCTCCAAGTGGAGATCTTAACCGACCACCCAAGACCATCATCAAACC
GAAAAGGAAATACCGATCCACAGCACTGGTCATCAATGTGGCAAGCTTTC
TAGACCAT

BO33948.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG15545-RA 1077 CG15545-PA 1..1074 17..1090 5370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15545-RA 1267 CG15545-RA 72..1145 17..1090 5370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30871061..30871871 1090..280 4055 100 Minus
3R 32079331 3R 30871954..30872199 280..35 1230 100 Minus
Blast to na_te.dros performed on 2014-11-28 13:44:02 has no hits.

BO33948.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-23 10:50:15 Download gff for BO33948.complete
Subject Subject Range Query Range Percent Splice Strand
CG15545-RA 1..1074 17..1092 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:13:28 Download gff for BO33948.complete
Subject Subject Range Query Range Percent Splice Strand
CG15545-RA 72..1145 17..1092 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:49 Download gff for BO33948.complete
Subject Subject Range Query Range Percent Splice Strand
CG15545-RA 72..1145 17..1092 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:49 Download gff for BO33948.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30871058..30871870 281..1092 99 <- Minus
3R 30871954..30872199 35..280 100 <- Minus
3R 30872263..30872280 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:13:28 Download gff for BO33948.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26696780..26697592 281..1092 99 <- Minus
arm_3R 26697676..26697921 35..280 100 <- Minus
arm_3R 26697985..26698002 17..34 100   Minus

BO33948.pep Sequence

Translation from 16 to 1108

> BO33948.pep
MKVCWNFFAAAVLLVTVTSGLRPPRSYYRRSYFSAVGSGSGHAPSSLPGP
VRIGPASYFRADLQTNESKHRPLSKKYPKKSHYRPYGSQEEEDEQRYNSA
EYSGESSVQDSREYTIGTQIRVQHPITVPKKSSSGYQKQPKYVTAIPYKA
SGYGSDIHKPSGYGSDVHIGSGEDVGPPPKRSKWTPVQYESEADPFHLVP
PPKATVASSSNSYSVYEPEHDDYEVVPVPRPKSHDRYKSVASKKQVEAYL
EDQQKLLDEAIKVQLLNNPKLQKFFKAQAQEQERESRPDLEIEDFEAYPP
NFSGPGHLRNKYIEHPPSSPPKGSRSRRRPPSGDLNRPPKTIIKPKRKYR
STALVINVASFLDH

BO33948.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG15545-PA 358 CG15545-PA 1..358 1..358 1904 100 Plus