Clone BO33949 Report

Search the DGRC for BO33949

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:339
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG13300-RA
Protein status:BO33949.pep: Imported from assembly
Sequenced Size:1198

Clone Sequence Records

BO33949.complete Sequence

1198 bp assembled on 2013-05-17

GenBank Submission: KX797103

> BO33949.complete
GAAGTTATCAGTCGACATGCCATCCGTAGCAAACAGCAACTACAGCAACG
ATGCGCGTCTCGGTTACGTCGTAAATCAAGTTGCATCCGTATCTGTGTCC
ATATCCGCATCCGCATCCGCCCTGCCCTCCGTATCCGCATCCGAATTTCC
TACTTTCAGTCCACCGCGGATTGCCAGTCTGGTGGCCAGCAGCTCCGCGG
AGGACTTGAGCAGCTTTGGTGACGTGACGTTCGACATCTTCGATGACGAT
GACGACTTGTTCGGCTCGCCAATGGCCTTTGATGCCAGCGAACAGGGCCT
CTGGAACGGACGCTTTGTACCGCCACCGCCCCGCCCGCCTTTCTTCGTCG
ACGAGCCGGTGCTGAGCGACGGCCTGACCACGTGTGATTTGTGCTCCTGG
GCGATGCCCACCAAGAGCACATTCATGTTCGAGGGAACGATAGAAAAGGC
CACAGAACTGGGCTGGCCACTGACTCTGATCATCGTGTCCGTGTTGTCGG
CGCTGCTAGGCGCCATCATCATGATTGCCGTGGTGCGCTGCCGGCGCAAA
AAGTCCTCCAACAATCGCAACGACACGCACGTGCAATGGTGGTCTCGCAA
CAAACGCGCCCACGGCAACGGATTGAATGGCGCGGGCGGGGCAAGTGGAG
CGGCGGGTGGTGCCGGCGGCAATGTGCACCACCACAACGGCAGCAGCAGC
AACATAAACAACAACCACCTGAGGAGGAGCAACATCTACACGGCCCACCC
GGCGGACAGCATACGAGGTCTGCAACCGCTGCCGGTGGTGCTGCCTCTGC
CACTGTCATTGCCCCACCCACCTTCTGGTGGAGCCTCGCCAGCGTCGTCG
TCGACCACACCGCCTGCTACACAGCAGCAGCAACATCAGCCGTTGCAACA
GCAGCAGTACTTCCATCCATACCAGCAGCAACAGCATGTGCACCACTCGC
ATACGCACCACCATCACACGCACCACCATGTGCCGCTGTATCCACACGAC
TGTGACGAGGATGCCGCCTACGAGGAACCGGAGTACCATCAGCCGCAGCA
GCTGCACTCGGTCAACAGCAGTAGTTCGTTGTCCTCGATGGGATCGTCAT
CGCTGCCACAGGAGGCAAGCAATTCCCGAGCCACCCACTGGCCACCGGGT
GCCACATCAGCCACCATGGTCATAGCCAGCGCAAGCTTTCTAGACCAT

BO33949.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13300-RA 1167 CG13300-PA 1..1164 17..1180 5805 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13300-RA 4303 CG13300-RA 1431..2594 17..1180 5805 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6331033..6331641 1180..572 3045 100 Minus
3L 28110227 3L 6332470..6332896 443..17 2120 99.8 Minus
3L 28110227 3L 6332064..6332194 572..442 655 100 Minus
Blast to na_te.dros performed 2014-11-28 13:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2286..2535 660..905 204 56.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6739..7035 676..975 174 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2396..2711 678..990 166 55.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6781..7197 676..1070 165 54.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2641 664..978 155 54.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6939 678..906 152 55.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6760..6830 676..742 146 73.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2433..2854 671..1073 144 54.9 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3264..3345 664..739 144 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6821..6915 664..761 139 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2622..2859 677..913 134 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2789..2868 676..748 132 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2478..2546 667..738 118 66.7 Plus

BO33949.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-17 15:32:03 Download gff for BO33949.complete
Subject Subject Range Query Range Percent Splice Strand
CG13300-RA 1431..2594 17..1182 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:10:31 Download gff for BO33949.complete
Subject Subject Range Query Range Percent Splice Strand
CG13300-RA 1431..2594 17..1182 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:29 Download gff for BO33949.complete
Subject Subject Range Query Range Percent Splice Strand
CG13300-RA 1431..2594 17..1182 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:29 Download gff for BO33949.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6331030..6331640 573..1182 99 <- Minus
3L 6332064..6332192 444..572 100 <- Minus
3L 6332470..6332896 17..443 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:10:31 Download gff for BO33949.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6324130..6324740 573..1182 99 <- Minus
arm_3L 6325164..6325292 444..572 100 <- Minus
arm_3L 6325570..6325996 17..443 99   Minus

BO33949.pep Sequence

Translation from 16 to 1198

> BO33949.pep
MPSVANSNYSNDARLGYVVNQVASVSVSISASASALPSVSASEFPTFSPP
RIASLVASSSAEDLSSFGDVTFDIFDDDDDLFGSPMAFDASEQGLWNGRF
VPPPPRPPFFVDEPVLSDGLTTCDLCSWAMPTKSTFMFEGTIEKATELGW
PLTLIIVSVLSALLGAIIMIAVVRCRRKKSSNNRNDTHVQWWSRNKRAHG
NGLNGAGGASGAAGGAGGNVHHHNGSSSNINNNHLRRSNIYTAHPADSIR
GLQPLPVVLPLPLSLPHPPSGGASPASSSTTPPATQQQQHQPLQQQQYFH
PYQQQQHVHHSHTHHHHTHHHVPLYPHDCDEDAAYEEPEYHQPQQLHSVN
SSSSLSSMGSSSLPQEASNSRATHWPPGATSATMVIASASFLDH

BO33949.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13300-PA 388 CG13300-PA 1..388 1..388 2073 100 Plus
CG42747-PC 404 CG42747-PC 33..320 53..370 420 33.8 Plus
sd-PQ 625 CG8544-PQ 139..284 201..342 185 34.6 Plus
na-PG 2224 CG1517-PG 14..208 193..390 166 28.6 Plus
na-PF 2233 CG1517-PF 14..208 193..390 166 28.6 Plus