BO33949.complete Sequence
1198 bp assembled on 2013-05-17
GenBank Submission: KX797103
> BO33949.complete
GAAGTTATCAGTCGACATGCCATCCGTAGCAAACAGCAACTACAGCAACG
ATGCGCGTCTCGGTTACGTCGTAAATCAAGTTGCATCCGTATCTGTGTCC
ATATCCGCATCCGCATCCGCCCTGCCCTCCGTATCCGCATCCGAATTTCC
TACTTTCAGTCCACCGCGGATTGCCAGTCTGGTGGCCAGCAGCTCCGCGG
AGGACTTGAGCAGCTTTGGTGACGTGACGTTCGACATCTTCGATGACGAT
GACGACTTGTTCGGCTCGCCAATGGCCTTTGATGCCAGCGAACAGGGCCT
CTGGAACGGACGCTTTGTACCGCCACCGCCCCGCCCGCCTTTCTTCGTCG
ACGAGCCGGTGCTGAGCGACGGCCTGACCACGTGTGATTTGTGCTCCTGG
GCGATGCCCACCAAGAGCACATTCATGTTCGAGGGAACGATAGAAAAGGC
CACAGAACTGGGCTGGCCACTGACTCTGATCATCGTGTCCGTGTTGTCGG
CGCTGCTAGGCGCCATCATCATGATTGCCGTGGTGCGCTGCCGGCGCAAA
AAGTCCTCCAACAATCGCAACGACACGCACGTGCAATGGTGGTCTCGCAA
CAAACGCGCCCACGGCAACGGATTGAATGGCGCGGGCGGGGCAAGTGGAG
CGGCGGGTGGTGCCGGCGGCAATGTGCACCACCACAACGGCAGCAGCAGC
AACATAAACAACAACCACCTGAGGAGGAGCAACATCTACACGGCCCACCC
GGCGGACAGCATACGAGGTCTGCAACCGCTGCCGGTGGTGCTGCCTCTGC
CACTGTCATTGCCCCACCCACCTTCTGGTGGAGCCTCGCCAGCGTCGTCG
TCGACCACACCGCCTGCTACACAGCAGCAGCAACATCAGCCGTTGCAACA
GCAGCAGTACTTCCATCCATACCAGCAGCAACAGCATGTGCACCACTCGC
ATACGCACCACCATCACACGCACCACCATGTGCCGCTGTATCCACACGAC
TGTGACGAGGATGCCGCCTACGAGGAACCGGAGTACCATCAGCCGCAGCA
GCTGCACTCGGTCAACAGCAGTAGTTCGTTGTCCTCGATGGGATCGTCAT
CGCTGCCACAGGAGGCAAGCAATTCCCGAGCCACCCACTGGCCACCGGGT
GCCACATCAGCCACCATGGTCATAGCCAGCGCAAGCTTTCTAGACCAT
BO33949.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13300-RA | 1167 | CG13300-PA | 1..1164 | 17..1180 | 5805 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13300-RA | 4303 | CG13300-RA | 1431..2594 | 17..1180 | 5805 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6331033..6331641 | 1180..572 | 3045 | 100 | Minus |
3L | 28110227 | 3L | 6332470..6332896 | 443..17 | 2120 | 99.8 | Minus |
3L | 28110227 | 3L | 6332064..6332194 | 572..442 | 655 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 13:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2286..2535 | 660..905 | 204 | 56.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..7035 | 676..975 | 174 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2396..2711 | 678..990 | 166 | 55.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..7197 | 676..1070 | 165 | 54.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2641 | 664..978 | 155 | 54.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6939 | 678..906 | 152 | 55.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6830 | 676..742 | 146 | 73.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2854 | 671..1073 | 144 | 54.9 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3264..3345 | 664..739 | 144 | 68.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6821..6915 | 664..761 | 139 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..2859 | 677..913 | 134 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2789..2868 | 676..748 | 132 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2478..2546 | 667..738 | 118 | 66.7 | Plus |
BO33949.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-17 15:32:03 Download gff for
BO33949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13300-RA | 1431..2594 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:10:31 Download gff for
BO33949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13300-RA | 1431..2594 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:29 Download gff for
BO33949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13300-RA | 1431..2594 | 17..1182 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:29 Download gff for
BO33949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6331030..6331640 | 573..1182 | 99 | <- | Minus |
3L | 6332064..6332192 | 444..572 | 100 | <- | Minus |
3L | 6332470..6332896 | 17..443 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:10:31 Download gff for
BO33949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6324130..6324740 | 573..1182 | 99 | <- | Minus |
arm_3L | 6325164..6325292 | 444..572 | 100 | <- | Minus |
arm_3L | 6325570..6325996 | 17..443 | 99 | | Minus |
BO33949.pep Sequence
Translation from 16 to 1198
> BO33949.pep
MPSVANSNYSNDARLGYVVNQVASVSVSISASASALPSVSASEFPTFSPP
RIASLVASSSAEDLSSFGDVTFDIFDDDDDLFGSPMAFDASEQGLWNGRF
VPPPPRPPFFVDEPVLSDGLTTCDLCSWAMPTKSTFMFEGTIEKATELGW
PLTLIIVSVLSALLGAIIMIAVVRCRRKKSSNNRNDTHVQWWSRNKRAHG
NGLNGAGGASGAAGGAGGNVHHHNGSSSNINNNHLRRSNIYTAHPADSIR
GLQPLPVVLPLPLSLPHPPSGGASPASSSTTPPATQQQQHQPLQQQQYFH
PYQQQQHVHHSHTHHHHTHHHVPLYPHDCDEDAAYEEPEYHQPQQLHSVN
SSSSLSSMGSSSLPQEASNSRATHWPPGATSATMVIASASFLDH
BO33949.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:16:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13300-PA | 388 | CG13300-PA | 1..388 | 1..388 | 2073 | 100 | Plus |
CG42747-PC | 404 | CG42747-PC | 33..320 | 53..370 | 420 | 33.8 | Plus |
sd-PQ | 625 | CG8544-PQ | 139..284 | 201..342 | 185 | 34.6 | Plus |
na-PG | 2224 | CG1517-PG | 14..208 | 193..390 | 166 | 28.6 | Plus |
na-PF | 2233 | CG1517-PF | 14..208 | 193..390 | 166 | 28.6 | Plus |