BO33950.complete Sequence
1921 bp assembled on 2013-05-17
GenBank Submission: KX797196
> BO33950.complete
GAAGTTATCAGTCGACATGTGGACATCCGCAAAAAATGTACAATTTGAGA
ATTACCAAAGAATTGCAGCGATGAGCAAGAAGAAAAGCAATGTGTGGCAG
TACTTCTACAAGACATCCGGCACAGTGGCCACCTGTCTGCTGTGCAACAG
GAACTACTCGAGGCGAGGACGCGGCACAACATGTCTGCGGAATCATCTGA
AGAGCAAGCACCCACCGGAGTTCCTATCTCTATCCGGGGACATAAAGTAC
CTGGACCTGGTTAAGAGCGAGATCTCCATCGGTTCGCCACAGCACCCCAC
AGCCCAGCTAGAATTGAATCTGCACGAAACAGATTCAGATCCATTGGACA
CCGAGGATATATCCTACAGCAAACGCTGTGATGAGAAGTTGGCCCTCATG
CTACTAAATCACTCCTTTGAGTTCATTGAAGGACCAGGATTCGTAAATTT
CATTAGGACGCTGCAGCCGCGGTACACGATTCAACCAAGGAGCTACTATG
AGAAGATACTGTGCGAGGATATACAAAGGAAAATGCATCAGCATTTGAAG
CAACAGGTGGATCTGCTGGATGCCATATCGTTGTCTACGAGTCTCTGGCG
TGGTGACAAAGGCGAAGGACTGCTGAGCTTGTCCTGCTCCGGAATATCAA
GGGATTTTCAGACTCACCGCCTAATGCTGAAATGCGAGGCTCTGAATTAC
GAAAGCACTTCGAAGCTAGCTTGTTGCATTCGAGATCTTGTGCCCAGCTT
GGCCATTGAGGTGCCCAAAGAGAAGATACACTGCGTAATCAGGGACGAGA
TGACGGCGCTGCCAGGTTCCCTGCCCGATTGCAGTGTGCACCGCCTGCAG
ATGTGCGTTCGATTTGCTTTGCAATCGAACGAATTACTGCAGAACCTTTC
ATCCAAGTGCAAGCAAATAGTTGACCATTTTGCGTCGTCTAAGATGGCCA
ACGATCATCTGAAATTCATTCAAGAGATCCGCTTGACGCGAGACCCGTGC
ACACTTACACCTTACGATCCCTGTCAATGGAATTCCGCTTTTCAGATGAT
GAGCAGCGTGTTTCGAATGAAAGATGCTCTATCCTTGTACTGCGAAGAGT
ATAGTCTGGTCCAAATATATCCAGATGAATGGATAGAGATCGATTTGTGC
AGCAAAGTAATGCAGCCTTGTGAAGAAACAATCAAGATATGGAGCAATCC
ATCTACGACCACCTCATCCGTAATCCCGCTGGTTGCCGCTTTACGGGATT
CCCTCCGAACAGATGTCCATAACTTTGTCTCATCTGTGACTATATGCAGT
TTCGCCAGAAAGTTGCTTGAAGAACTGGAAATGAAGTTCGCCCACATCAC
TAGCGACATCAACTTTTTGATGGCCACATATTTGGATCCGAGATATAAGC
AAGCATTTTTCACCGAACGTGAGGAGCAGTTGGTGGCCAATGAAGTTCTG
CTTCAGCTCGCTGGAGTGCCAGAGGATTGCAATGGTCAGCCACCGCTGAA
AATAATCAAAGTGTCATCCACATCGTCCCAGAAGAATGAATCAAAGATCG
ATAGCATTCTGGATAGCATACTGACAACTGGAACGACGAACACTCAACAG
CCAAATACGTCAATGGGCTCCCAGTCTCAGATTAAGAATCTGCTATATCT
ATACAACTCCGAACCCAGAATCGATAGGAACATGGATCCCCTGATTTGGT
GGAGGAGCAACATAAAATACATATCCTTGTATGGCATTGTTAGGAAATTC
TTATCAGCACCAGCAGCAAGTGTGGTTAGTGAAGGCTTATTTAGAAAATC
AACGCACTTGTATTTCGACATGCAGGCGGGCTTGAGCCCCGAAAGTGCAT
CCAAAATGTTGCTCATGAAGGCCAACTTTAGCTTTAGCAATTCGGAAATC
AATGCAAGCTTTCTAGACCAT
BO33950.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13775-RB | 1836 | CG13775-PB | 1..1833 | 71..1903 | 9165 | 100 | Plus |
| CG13775-RA | 1836 | CG13775-PA | 1..1833 | 71..1903 | 9165 | 100 | Plus |
| CG13775-RC | 1509 | CG13775-PC | 1..1506 | 398..1903 | 7530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13775-RB | 2142 | CG13775-RB | 25..1911 | 17..1903 | 9435 | 100 | Plus |
| CG13775-RA | 1945 | CG13775-RA | 25..1911 | 17..1903 | 9435 | 100 | Plus |
| CG13775-RC | 1648 | CG13775-RC | 37..1614 | 326..1903 | 7890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6955257..6956219 | 1288..326 | 4815 | 100 | Minus |
| 2L | 23513712 | 2L | 6954588..6955203 | 1903..1288 | 3080 | 100 | Minus |
| 2L | 23513712 | 2L | 6956617..6956926 | 326..17 | 1550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:37:37 has no hits.
BO33950.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-17 15:32:05 Download gff for
BO33950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13775-RA | 1..1833 | 71..1905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:10:33 Download gff for
BO33950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13775-RA | 25..1911 | 17..1905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:30 Download gff for
BO33950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13775-RA | 25..1911 | 17..1905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:30 Download gff for
BO33950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6954586..6955202 | 1289..1905 | 99 | <- | Minus |
| 2L | 6955257..6956219 | 326..1288 | 100 | <- | Minus |
| 2L | 6956618..6956926 | 17..325 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:10:33 Download gff for
BO33950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6954586..6955202 | 1289..1905 | 99 | <- | Minus |
| arm_2L | 6955257..6956219 | 326..1288 | 100 | <- | Minus |
| arm_2L | 6956618..6956926 | 17..325 | 100 | | Minus |
BO33950.pep Sequence
Translation from 16 to 1921
> BO33950.pep
MWTSAKNVQFENYQRIAAMSKKKSNVWQYFYKTSGTVATCLLCNRNYSRR
GRGTTCLRNHLKSKHPPEFLSLSGDIKYLDLVKSEISIGSPQHPTAQLEL
NLHETDSDPLDTEDISYSKRCDEKLALMLLNHSFEFIEGPGFVNFIRTLQ
PRYTIQPRSYYEKILCEDIQRKMHQHLKQQVDLLDAISLSTSLWRGDKGE
GLLSLSCSGISRDFQTHRLMLKCEALNYESTSKLACCIRDLVPSLAIEVP
KEKIHCVIRDEMTALPGSLPDCSVHRLQMCVRFALQSNELLQNLSSKCKQ
IVDHFASSKMANDHLKFIQEIRLTRDPCTLTPYDPCQWNSAFQMMSSVFR
MKDALSLYCEEYSLVQIYPDEWIEIDLCSKVMQPCEETIKIWSNPSTTTS
SVIPLVAALRDSLRTDVHNFVSSVTICSFARKLLEELEMKFAHITSDINF
LMATYLDPRYKQAFFTEREEQLVANEVLLQLAGVPEDCNGQPPLKIIKVS
STSSQKNESKIDSILDSILTTGTTNTQQPNTSMGSQSQIKNLLYLYNSEP
RIDRNMDPLIWWRSNIKYISLYGIVRKFLSAPAASVVSEGLFRKSTHLYF
DMQAGLSPESASKMLLMKANFSFSNSEINASFLDH
BO33950.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13775-PB | 611 | CG13775-PB | 1..611 | 19..629 | 3185 | 100 | Plus |
| CG13775-PA | 611 | CG13775-PA | 1..611 | 19..629 | 3185 | 100 | Plus |
| CG13775-PC | 502 | CG13775-PC | 1..502 | 128..629 | 2604 | 100 | Plus |
