BO33952.complete Sequence
1102 bp assembled on 2013-04-22
GenBank Submission: KX796734
> BO33952.complete
GAAGTTATCAGTCGACATGTTGTTCGGACTTATAGGATCATTTTTGCTTA
TGCTGCAAATAATTCTTGTGCCTTATTCAAATGGTGCAGGGTGTCAATTT
GATACGGAATGCGTGAATCTGGATAAGTGTCCCAGGACCAGAGCAGTTAT
GAACTCATCCAGGAAAAATATAATAGGTCTTAGAAGATGCGGCACTAATA
AAGTGTGCTGCCCCAAGTGGGAAACGTATCTGCCACACGATACTTGTGGA
CAATCAAGAAGAAAACCTACGAAGGGCAAAATACCGGCGCTGAATGAGTT
TCCCTGGATGGCCATGCTGTTATATGGAAATAAAAACAATTTGTCCCAGA
AGCTGGTACCAAAATGTGGTGGATCCCTAATAAACAACTGGTACGTCCTG
ACCGCAGCGCACTGCGTGGAGTATCCATTTATGGACTATCCGTATGCCCT
CAAAACAGTGAGACTGGGCGAACATAACACGTCCACAAATCCCGATCGGG
CTATTGTGAATGGAAGAAGACAGTACGCTCCTCTTTATATGGAAATTGAA
GTGGACCAAATTATTACGCATGAACAATTCAACCGGGGAAGGCGGCTGAT
AAACGACATAGCACTCGTGCGTCTTAAGTTTCCTGTGCGCTATACGAGAG
CCATCCAACCTATTTGCCTTCCAAGAGCCCAAAAATTGGCCGCGCATAAG
CGAAAGTTTCAAGCATCCGGCTGGCCAGACATGGGACAAGGAATTGCAAG
TGAGGTACTCTTGCGCAGCTTCATCGCGGAACGGCATCCAGATGTGTGCA
AATCAAATTATGACTTTAATTTGGGCAGTCAGATATGTGCTGGTGGTCTG
GATGGGAATGACACCAGTCCCGGCGATTCCGGGGGACCCTTAATGGAGAC
CGTGATACGTGGAAAGGTCACACTCACTTATGCAGCCGGCATAATCTCCT
ACGGACAGAAGCCCTGCGTACTTAAAACTTGCAAGCCAGCATTTTACACA
AAAACTTCATACTTTTTTGAATGGATAAAATCGAAATTGCAAAGTCCATT
TATCGACAGCGACAGCAAATCTCGTACTAGAAAAGCAAGCTTTCTAGACC
AT
BO33952.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:31:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8870-RA | 1071 | CG8870-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8870-RA | 1535 | CG8870-RA | 297..1366 | 15..1084 | 5350 | 100 | Plus |
| mRpS21-RB | 475 | CG32854-RB | 411..475 | 1084..1020 | 325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13380266..13380818 | 87..639 | 2765 | 100 | Plus |
| 3R | 32079331 | 3R | 13380895..13381340 | 639..1084 | 2230 | 100 | Plus |
| 3R | 32079331 | 3R | 13380138..13380213 | 15..90 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:31:20 has no hits.
BO33952.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-22 17:37:51 Download gff for
BO33952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8870-RA | 6..1064 | 22..1080 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:31 Download gff for
BO33952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8870-RA | 6..1064 | 22..1080 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:02 Download gff for
BO33952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8870-RA | 304..1362 | 22..1080 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:02 Download gff for
BO33952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13380145..13380212 | 22..89 | 100 | -> | Plus |
| 3R | 13380269..13380818 | 90..639 | 100 | -> | Plus |
| 3R | 13380896..13381336 | 640..1080 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:31 Download gff for
BO33952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9205867..9205934 | 22..89 | 100 | -> | Plus |
| arm_3R | 9205991..9206540 | 90..639 | 100 | -> | Plus |
| arm_3R | 9206618..9207058 | 640..1080 | 100 | | Plus |
BO33952.pep Sequence
Translation from 16 to 1102
> BO33952.pep
MLFGLIGSFLLMLQIILVPYSNGAGCQFDTECVNLDKCPRTRAVMNSSRK
NIIGLRRCGTNKVCCPKWETYLPHDTCGQSRRKPTKGKIPALNEFPWMAM
LLYGNKNNLSQKLVPKCGGSLINNWYVLTAAHCVEYPFMDYPYALKTVRL
GEHNTSTNPDRAIVNGRRQYAPLYMEIEVDQIITHEQFNRGRRLINDIAL
VRLKFPVRYTRAIQPICLPRAQKLAAHKRKFQASGWPDMGQGIASEVLLR
SFIAERHPDVCKSNYDFNLGSQICAGGLDGNDTSPGDSGGPLMETVIRGK
VTLTYAAGIISYGQKPCVLKTCKPAFYTKTSYFFEWIKSKLQSPFIDSDS
KSRTRKASFLDH
BO33952.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:13:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8870-PA | 356 | CG8870-PA | 1..356 | 1..356 | 1918 | 100 | Plus |
| CG31220-PB | 363 | CG31220-PB | 27..362 | 26..342 | 549 | 41 | Plus |
| CG10232-PD | 509 | CG10232-PD | 188..508 | 26..342 | 520 | 38.5 | Plus |
| CG16710-PB | 372 | CG16710-PB | 30..362 | 26..337 | 517 | 39.1 | Plus |
| CG31219-PB | 345 | CG31219-PB | 8..344 | 9..342 | 506 | 40 | Plus |
