BO33956.complete Sequence
1723 bp assembled on 2013-05-17
GenBank Submission: KX799333
> BO33956.complete
GAAGTTATCAGTCGACATGGAAGTGCCCACCGTCAGGAGTCCCCAGCGGG
AAGCCGAGGCCATTAAGGTAAACATGGCCAGCATTGAACAGAACATCCAG
AAAGCCTTGACTGCCGAGGAATACGAAAATATCTTAAACCATGTAAACAG
CTACGTGCAGCAGTTGGTCGAGCTGAAAATGCAGCAGCATTCCAAGGAGC
TCGCACCGCAACAGATTGAACTCTTTGTTAAGCTGATGAAGGAAAACCTC
AAGCAGATTATGTACAAAACGGAGCTAAGCGAAAAGGATTTGTCTGATCT
GGCCATAAAACTGAAACTGGAGCTGCAAAGCTCAGGCGGTTGGCAAGATG
GAGCGAAACTATCACAAGCTAACTTAGAGGAGATAACCAAGCTAATTAAA
GCAGAGGTTCACCTCCACGAATCGCACTACACCATTCAATTGGACAGGAT
AGACTTTGCATCCCTGCTGGAGCGTATTCTTGCTGCGCCGGCATTGGCAG
ACTTTGTAGATGCTCGAATAAGTCTTCGGGTGGGAGAGCTCGAGCCAAAG
GAGAGTTCCGGTTCCTCAGATGCAGAAGTCCAAATTGAGCGTCTGAACAG
GGAAATCGCCTTCATTAAGTTGGCTCTCTCTGACAAGCAAGCGGAGAACG
CCGATCTGCACCAATCAATCAGCAATCTGAAGCTCGGCCAAGAGGATTTG
CTGGAACGCATACAGCAGCACGAACTTTCCCAGGATAGGCGCTTCCACGG
GTTGCTGGCTGAAATAGAAAACAAACTGTCTGCGCTTAACGACTCGCAGT
TTGCTCTTCTCAACAAGCAGATCAAGCTATCCCTTGTCGAAATTCTGGGC
TTTAAGCAATCCACCGCTGGCGGTTCCGCTGGCCAATTGGATGACTTCGA
TCTGCAGACCTGGGTACGCAGCATGTTTGTGGCCAAGGACTACCTGGAGC
AGCAGCTGCTAGAGCTGAACAAGCGCACCAATAACAACATTCGCGACGAG
ATTGAGCGTTCGAGCATCCTGCTGATGAGCGACATTAGCCAACGACTCAA
ACGGGAGATTCTTCTGGTTGTGGAGGCCAAGCATAACGAGAGCACCAAAG
CGTTGAAGGGCCATATCCGCGAAGAGGAGGTGCGCCAGATAGTCAAGACG
GTGCTAGCTATTTACGATGCCGACAAGACGGGCCTGGTGGACTTCGCCCT
GGAGTCGGCGGGCGGCCAAATCCTTTCCACGCGTTGCACTGAGAGCTACC
AGACAAAGTCAGCCCAGATATCGGTGTTTGGAATTCCACTCTGGTATCCC
ACCAACACGCCGCGGGTCGCCATTTCACCCAATGTGCAGCCAGGGGAATG
CTGGGCATTCCAAGGGTTTCCCGGATTTCTAGTGCTAAAGCTCAACTCGT
TGGTGTACGTCACTGGATTCACCCTAGAGCACATACCGAAGAGTCTATCC
CCCACAGGAAGAATAGAATCAGCTCCTCGCAACTTCACTGTCTGGGGCTT
GGAGCAGGAGAAGGACCAGGAACCCGTATTGTTCGGCGATTACCAGTTTG
AGGACAATGGTGCTTCCCTCCAGTACTTTGCCGTTCAAAACCTGGACATC
AAACGGCCGTACGAGATCGTCGAACTGCGGATCGAGACGAACCATGGCCA
TCCCACCTATACATGCCTCTACCGGTTTCGCGTGCACGGCAAGCCGCCGG
CCACAGCAAGCTTTCTAGACCAT
BO33956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| koi-RC | 2898 | CG44154-PC | 1207..2895 | 17..1705 | 8430 | 99.9 | Plus |
| koi-RB | 2646 | CG44154-PB | 955..2643 | 17..1705 | 8430 | 99.9 | Plus |
| koi-RA | 2898 | CG44154-PA | 1207..2895 | 17..1705 | 8430 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| koi-RC | 4233 | CG44154-RC | 1348..3036 | 17..1705 | 8430 | 99.9 | Plus |
| koi-RB | 4100 | CG44154-RB | 1215..2903 | 17..1705 | 8430 | 99.9 | Plus |
| koi-RA | 4276 | CG44154-RA | 1391..3079 | 17..1705 | 8430 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6815194..6816559 | 17..1382 | 6815 | 99.9 | Plus |
| 2R | 25286936 | 2R | 6816792..6817002 | 1495..1705 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 6816615..6816730 | 1381..1496 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:37:41 has no hits.
BO33956.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-17 15:32:07 Download gff for
BO33956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| koi-RB | 135..1823 | 17..1707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:10:35 Download gff for
BO33956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| koi-RA | 1391..3079 | 17..1707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:31 Download gff for
BO33956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| koi-RA | 1391..3079 | 17..1707 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:31 Download gff for
BO33956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6815194..6816555 | 17..1378 | 99 | <- | Plus |
| 2R | 6816615..6816729 | 1379..1495 | 98 | -> | Plus |
| 2R | 6816793..6817002 | 1496..1707 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:10:35 Download gff for
BO33956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2702699..2704060 | 17..1378 | 99 | <- | Plus |
| arm_2R | 2704120..2704234 | 1379..1495 | 98 | -> | Plus |
| arm_2R | 2704298..2704507 | 1496..1707 | 99 | | Plus |
BO33956.pep Sequence
Translation from 16 to 1723
> BO33956.pep
MEVPTVRSPQREAEAIKVNMASIEQNIQKALTAEEYENILNHVNSYVQQL
VELKMQQHSKELAPQQIELFVKLMKENLKQIMYKTELSEKDLSDLAIKLK
LELQSSGGWQDGAKLSQANLEEITKLIKAEVHLHESHYTIQLDRIDFASL
LERILAAPALADFVDARISLRVGELEPKESSGSSDAEVQIERLNREIAFI
KLALSDKQAENADLHQSISNLKLGQEDLLERIQQHELSQDRRFHGLLAEI
ENKLSALNDSQFALLNKQIKLSLVEILGFKQSTAGGSAGQLDDFDLQTWV
RSMFVAKDYLEQQLLELNKRTNNNIRDEIERSSILLMSDISQRLKREILL
VVEAKHNESTKALKGHIREEEVRQIVKTVLAIYDADKTGLVDFALESAGG
QILSTRCTESYQTKSAQISVFGIPLWYPTNTPRVAISPNVQPGECWAFQG
FPGFLVLKLNSLVYVTGFTLEHIPKSLSPTGRIESAPRNFTVWGLEQEKD
QEPVLFGDYQFEDNGASLQYFAVQNLDIKRPYEIVELRIETNHGHPTYTC
LYRFRVHGKPPATASFLDH
BO33956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| koi-PC | 965 | CG44154-PC | 403..965 | 1..563 | 2839 | 100 | Plus |
| koi-PB | 881 | CG44154-PB | 319..881 | 1..563 | 2839 | 100 | Plus |
| koi-PA | 965 | CG44154-PA | 403..965 | 1..563 | 2839 | 100 | Plus |
| spag4-PB | 275 | CG6589-PB | 113..274 | 391..559 | 176 | 28.1 | Plus |
