BO33958.complete Sequence
586 bp assembled on 2013-04-19
GenBank Submission: KX800050
> BO33958.complete
GAAGTTATCAGTCGACATGGATAACTATAACCACAAGAAATTCACTGGAG
CTCTGAAGCGAAAGCGCAGCATGGATGCGGACTCTGATGACGATGTGGTC
TTCATTATGGAACAGCCGGGCCAACGCACTCCAGAGCAGCCGCAGCCTAA
GCGTCGCTTCTTCCGACCCTGGATGGATGAGTCTCCGGAAGAGGAGCAAC
CACAGCCGCCACGTAAGATTGTGGCTACATCGACACCGCCGCCACAACAA
GTGGATGGCACCTACCACGCTAACATGGTGCGCAATCACCACAAGCGCCG
CCAGCGCAGTCCACAGGAGCAACTGCGTCGGGATCGCAACACCTTGGCCA
GCCTGCGCCATCGACGCTCCCAGCAGCAACAGCAGCAGCTCATCGAACAA
CAATACCTGACCAGTCGCATTCAGCACGAGGCCAATCTGCAGCAGCAGAT
CCGCCTGAGTCTCTACTATGTGCGCTTCCTGCAGCAGGCGATGGCCTCCA
CGGAGCCACTGCCTCCCACACAGCCAAGGCACATGATGCCGCGCCAACAG
ACCACCACCCAGCATCCTGCAAGCTTTCTAGACCAT
BO33958.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:19:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16813-RB | 555 | CG16813-PB | 1..552 | 17..568 | 2760 | 100 | Plus |
| CG16813-RA | 555 | CG16813-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:19:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16813-RB | 902 | CG16813-RB | 234..785 | 17..568 | 2760 | 100 | Plus |
| CG16813-RA | 715 | CG16813-RA | 47..598 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:19:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13227853..13228404 | 17..568 | 2760 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 13:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6883 | 288..448 | 164 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6900 | 258..441 | 154 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2481 | 285..454 | 150 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6823 | 371..448 | 128 | 65.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1146 | 350..447 | 121 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6802 | 371..448 | 119 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6847 | 371..448 | 118 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6799 | 368..448 | 116 | 63.4 | Plus |
BO33958.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:20:46 Download gff for
BO33958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16813-RA | 1..552 | 17..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:38 Download gff for
BO33958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16813-RA | 47..598 | 17..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:26:11 Download gff for
BO33958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16813-RA | 47..598 | 17..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:26:11 Download gff for
BO33958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13227853..13228404 | 17..570 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:38 Download gff for
BO33958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13227853..13228404 | 17..570 | 99 | | Plus |
BO33958.pep Sequence
Translation from 16 to 586
> BO33958.pep
MDNYNHKKFTGALKRKRSMDADSDDDVVFIMEQPGQRTPEQPQPKRRFFR
PWMDESPEEEQPQPPRKIVATSTPPPQQVDGTYHANMVRNHHKRRQRSPQ
EQLRRDRNTLASLRHRRSQQQQQQLIEQQYLTSRIQHEANLQQQIRLSLY
YVRFLQQAMASTEPLPPTQPRHMMPRQQTTTQHPASFLDH
BO33958.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16813-PB | 184 | CG16813-PB | 1..184 | 1..184 | 981 | 100 | Plus |
| CG16813-PA | 184 | CG16813-PA | 1..184 | 1..184 | 981 | 100 | Plus |
| CG16815-PB | 192 | CG16815-PB | 6..171 | 3..178 | 320 | 44.5 | Plus |
