Clone BO33959 Report

Search the DGRC for BO33959

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:339
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG9437-RA
Protein status:BO33959.pep: Imported from assembly
Sequenced Size:979

Clone Sequence Records

BO33959.complete Sequence

979 bp assembled on 2013-04-19

GenBank Submission: KX795195

> BO33959.complete
GAAGTTATCAGTCGACATGAGCTCAAACCACCGTCCTCTGGACGATTCGG
ATATCCTCCTAATACAAACCATCCGCGAGACGCCGTCGCTGTACGATCCC
CAGCTGCCCTCCTTTCGGCTGTCGCAGCGCAAAGAGGAGGACTGGGCAAA
AGTGGCGGATTTGCTAAACATCTCCATCTCAGACGCTCGGCGACGGTGGA
CGTGTCTGCGGGATCGCTATTCGCGGGAGCTTAAGCAGAAGCGCCTGCAT
CCGTCCGGCGAGTTTGGTCACAATGACTTCTTTCGGAAGATGGACTTCCT
GCGGGACTTTGTGCGCAAGAGACGCGAGCGCAGAGGACGCGAACGGGATC
GGGAACAAAAGCCAACCGGGTGGATGAAGGTTGATTTACAGCGACGGCGT
CGTACCCGCCTGCCTATTGACACAGAGACCTTGATCGAGGAGCAAGGTTC
GCACGCCTACGATGAGGGCGAGGAGCAGCACGACTACGACGCTAAGCTGG
AGTCTCATACCACACAATCGGAGACGTATTCGGTGGTCGTGGAGGCGGAC
GATGGGCAGGAGCCCGAACAGGAGAGCTTCGATGAGTTCCTGGGGGATGC
GGAGTGCGAGCAAAAGGTCAAGGTGGTCACAATTCATCCGGAAATCGCTG
CTCCGAATGCGACGTCCGCACCTGAGCCTATTGAGTCTAACCACGCGGAT
CTGAACTACTTGGTCTGTATGCCGCCCAATGCGAATCAGGAGCGAGAGCA
TTCCGCCCCAGAATTACCCAATCCCACGGCCGTCATCACCCAAAAGACTT
GCGAAACAGAGGACGACTTCTTTTGCAAGTCGATTGCCGCGTATTTGCGC
CAACTGTCGCGCGTGCACAAGATCAAGGCCAAGGTGGAGATGTACCAGAT
TCTAGAGAAGTACATACTGCTCGAGGAGTGCGGAAAGGGGTCGGGTGCGG
GCGGATCAGGCGCAAGCTTTCTAGACCAT

BO33959.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
hng1-RA 948 CG9437-PA 1..945 17..961 4710 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
hng1-RA 1081 CG9437-RA 68..1012 17..961 4710 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21168997..21169941 17..961 4710 99.9 Plus
Blast to na_te.dros performed on 2014-11-28 13:19:38 has no hits.

BO33959.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:22:11 Download gff for BO33959.complete
Subject Subject Range Query Range Percent Splice Strand
CG9437-RA 38..982 17..963 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:39 Download gff for BO33959.complete
Subject Subject Range Query Range Percent Splice Strand
CG9437-RA 68..1012 17..963 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:26:12 Download gff for BO33959.complete
Subject Subject Range Query Range Percent Splice Strand
hng1-RA 68..1012 17..963 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:26:12 Download gff for BO33959.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21168997..21169941 17..963 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:39 Download gff for BO33959.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17056502..17057446 17..963 99   Plus

BO33959.pep Sequence

Translation from 16 to 979

> BO33959.pep
MSSNHRPLDDSDILLIQTIRETPSLYDPQLPSFRLSQRKEEDWAKVADLL
NISISDARRRWTCLRDRYSRELKQKRLHPSGEFGHNDFFRKMDFLRDFVR
KRRERRGRERDREQKPTGWMKVDLQRRRRTRLPIDTETLIEEQGSHAYDE
GEEQHDYDAKLESHTTQSETYSVVVEADDGQEPEQESFDEFLGDAECEQK
VKVVTIHPEIAAPNATSAPEPIESNHADLNYLVCMPPNANQEREHSAPEL
PNPTAVITQKTCETEDDFFCKSIAAYLRQLSRVHKIKAKVEMYQILEKYI
LLEECGKGSGAGGSGASFLDH

BO33959.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
hng1-PA 315 CG9437-PA 1..315 1..315 1662 100 Plus