Clone BO33969 Report

Search the DGRC for BO33969

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:339
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptRavus-RA
Protein status:BO33969.pep: Imported from assembly
Sequenced Size:1112

Clone Sequence Records

BO33969.complete Sequence

1112 bp assembled on 2013-04-19

GenBank Submission: KX798448

> BO33969.complete
GAAGTTATCAGCTCGACATGTCAAACCTCCAGTTAACTCAGGAAAAACTA
GATGCCCTACGCTCCGAATACAGGCCACGCCGGCCGTGCGCCCTGCTGAA
ATATCCTCGACCCAAGACAAAGCCGGAGTACCAGGCGATATATCCGTGGT
TGCTCCCGGATGAGACGGATCCGCACTTCGTGTTCTGCGCGGTGTGCGAG
TGCAGGCTCAGCTGCAAGAGATCTGATCTGGGAAAGCACGAGGGTAGCAT
TAAGCACTCGGAAAATGCACAAAGAAAATCATTGCCAGCCAAGGCAAACA
ATTCGAGCTTCAATGGATCCAGCTCCGGTGCGATGAAGTGGGAGGATACC
GAGGACGAGGAGGGTCTACTACAATACGGAACAGATCCCCAAGACGACGA
GACAGAAGATGAGGAGGAGGGAGAACTTGACGAAACAGAGGGCGACTGCG
AGGACGATGAGAAGCGGACTCAAGAACTGGAAGCACAAAATGATCTCGAA
ACGGAGCCCGTCATTAAGCAGCAGCGCCGCACTTCGGAGACCGACTCACA
GAATTCTGGCATGCTGGATTATCTGCCACTACACGTGACCATCAACGAGG
GGCCTCAAAGTCTTCCGACCACTGTCTCCGCCTATCCCACATCCTCAGCA
ACAGCAACAGTAGCTCCGCCATGCAGGATCACCATTAAAAAAGTTCCAGT
GCACAGTACTCCACTCAGTGGGATGTGCCAAGCTCAGGAGATCAATTCCA
AGGCCACCATAACGCCTATACACACGACGCCCTCCTATGCTGCCCGCCCG
CTGCAATCTTATCAACTGCAACCATTGTCACCTATAACGCCACCGCGCGA
CTCATTGGAGCTGTTCTTCGACAGCATATGTGCCACCGTCAAGAACTTGC
CGCCCAAACTGGCCACCGAGGGTAAGATCCGGGTAATGCAGCTCATTGGG
GAGCTCGAGTTGCGTGCTCTTTGCGAACAGGAGGCGCTCTCTGAGGTCGC
CGGACTTCCGGATCTCGCGGGAAACTCCAGGTCTGGAGCAGCTGAAGCCT
CAGGCAGTGGTCAGCAGAATGCGACAGTGGCTTCTACCACCAAAGCAAGC
TTTCTAGACCAT

BO33969.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Ravus-RA 1080 CG15889-PA 1..1077 18..1094 5385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Ravus-RA 1269 CG15889-RA 64..1140 18..1094 5385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13262862..13263906 1094..50 5225 100 Minus
Blast to na_te.dros performed on 2014-11-28 13:19:52 has no hits.

BO33969.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:24:38 Download gff for BO33969.complete
Subject Subject Range Query Range Percent Splice Strand
Ravus-RA 35..1112 17..1096 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:45 Download gff for BO33969.complete
Subject Subject Range Query Range Percent Splice Strand
Ravus-RA 63..1140 17..1096 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:26:16 Download gff for BO33969.complete
Subject Subject Range Query Range Percent Splice Strand
Ravus-RA 63..1140 17..1096 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:26:16 Download gff for BO33969.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13262860..13263906 50..1096 99 <- Minus
3R 13263967..13263998 17..49 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:45 Download gff for BO33969.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9088582..9089628 50..1096 99 <- Minus
arm_3R 9089689..9089720 17..49 96   Minus

BO33969.pep Sequence

Translation from 17 to 1112

> BO33969.pep
MSNLQLTQEKLDALRSEYRPRRPCALLKYPRPKTKPEYQAIYPWLLPDET
DPHFVFCAVCECRLSCKRSDLGKHEGSIKHSENAQRKSLPAKANNSSFNG
SSSGAMKWEDTEDEEGLLQYGTDPQDDETEDEEEGELDETEGDCEDDEKR
TQELEAQNDLETEPVIKQQRRTSETDSQNSGMLDYLPLHVTINEGPQSLP
TTVSAYPTSSATATVAPPCRITIKKVPVHSTPLSGMCQAQEINSKATITP
IHTTPSYAARPLQSYQLQPLSPITPPRDSLELFFDSICATVKNLPPKLAT
EGKIRVMQLIGELELRALCEQEALSEVAGLPDLAGNSRSGAAEASGSGQQ
NATVASTTKASFLDH

BO33969.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
Ravus-PA 359 CG15889-PA 1..359 1..359 1875 100 Plus
CG43342-PA 180 CG31169-PA 103..157 271..326 152 55.4 Plus