BO33979.complete Sequence
1144 bp assembled on 2013-04-22
GenBank Submission: KX797527
> BO33979.complete
GAAGTTATCAGTCGACATGATCCTGAGCGTCGTGATGCCATTCACCAAGG
CGCGACACTTGCGCGACCAGGTGGCACTGGACTACGCCTACGACGAGGAC
AACTCCGGCCGATCTTCCTCGTCGTCATCGTCATCCTCATCATCGGGTGG
CGACATCCTGCCCGCCTTCGATGTCAATCCGTATCGCGGTCTGGCCGATA
GCTTCGGCGAGGGCAGCTACGACAGTGATATGAGTCTCAGCGAGAGTAGC
TACGAGGAGATCGCCCAGGCGGCCATCCGGGCTGCCAGGCGGGAGATGCG
CCGTCAGAGGACGCGACACGCGCGCAGCCACAACCTGCGACTCTTCTCCG
GCAAATCAGAGATCCCGGAGTGGGAGAACCCGTGCGGAGGCACCTACACG
CCCGACGAGAGCCTCAGCGATAGCAGCGCCAGCCAAGGACGAGTTATCAA
GCGCAAGCACCTCGAAAACTTGCGGAACATCACGATGAGCGAATACCAAG
ATATAACCCACCGCGCCACCCTGGAGTACGGCAATCTGCAGCACTGGCAG
CGCGAGTACAAGTTCCTGCCGAACATGACGAGGCCCACAAGTGCGGTGAA
GCTAAAGACTTGGTACCGCCACATGCAGACCTTCGTGGGCAGCTTCTCAT
ATCTGGGACGGGCGCAGTACAAGTTCCGCAAGGATCAGCAGAAGAGCCTC
AACGAGGCGGTCACCAAGGAGCTGCACGACCTGCTGGTCAGCGCGCGCTA
TATGCTCTGCGAGATCGAGTTGACCATAAACGCCTCCTATCCGAACAGCA
ATGGTGCGAAGCTGAGCCGCGTTAGCCGGCAGGCGATGGAGGAGCGTCTC
AACTTTCACACGCCCGCCAACGGATCCATGGAGGCGGACCAGCGCGACCT
GAAGGTCAGCAAGGAGCTGTACTTCCAGTATCTGAACAACGTGTGGAAGA
CCCTGCACCGTGTCCTGCGGCGACCGCGACGCAATAGTGCCGAGCGGCGA
CACCTGGCGGCGATTCACGGAACTGGTGCGAGCGGCCTGCGGGCGGGCAG
CTCGGAAATGCTCGACGTGGGCTCCTCGAACGGATCCGGTGGCAGTTCCG
GCTCCGATGGCGGATCCAATGAGTCTGCAAGCTTTCTAGACCAT
BO33979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| upd2-RB | 1113 | CG5988-PB | 1..1110 | 17..1126 | 5520 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| upd2-RB | 1980 | CG5988-RB | 173..1283 | 16..1126 | 5525 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18241351..18241882 | 1126..595 | 2630 | 99.6 | Minus |
| X | 23542271 | X | 18242565..18243006 | 457..16 | 2210 | 100 | Minus |
| X | 23542271 | X | 18242078..18242219 | 597..456 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:32:47 has no hits.
BO33979.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-22 17:52:11 Download gff for
BO33979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| upd2-RB | 1..1110 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:52 Download gff for
BO33979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| upd2-RB | 174..1283 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:17 Download gff for
BO33979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| upd2-RB | 174..1283 | 17..1128 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:17 Download gff for
BO33979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18241348..18241881 | 596..1128 | 99 | <- | Minus |
| X | 18242080..18242217 | 458..595 | 100 | <- | Minus |
| X | 18242565..18243005 | 17..457 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:52 Download gff for
BO33979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18135381..18135914 | 596..1128 | 99 | <- | Minus |
| arm_X | 18136113..18136250 | 458..595 | 100 | <- | Minus |
| arm_X | 18136598..18137038 | 17..457 | 100 | | Minus |
BO33979.pep Sequence
Translation from 16 to 1144
> BO33979.pep
MILSVVMPFTKARHLRDQVALDYAYDEDNSGRSSSSSSSSSSSGGDILPA
FDVNPYRGLADSFGEGSYDSDMSLSESSYEEIAQAAIRAARREMRRQRTR
HARSHNLRLFSGKSEIPEWENPCGGTYTPDESLSDSSASQGRVIKRKHLE
NLRNITMSEYQDITHRATLEYGNLQHWQREYKFLPNMTRPTSAVKLKTWY
RHMQTFVGSFSYLGRAQYKFRKDQQKSLNEAVTKELHDLLVSARYMLCEI
ELTINASYPNSNGAKLSRVSRQAMEERLNFHTPANGSMEADQRDLKVSKE
LYFQYLNNVWKTLHRVLRRPRRNSAERRHLAAIHGTGASGLRAGSSEMLD
VGSSNGSGGSSGSDGGSNESASFLDH
BO33979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:13:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| upd2-PB | 370 | CG5988-PB | 1..370 | 1..370 | 1909 | 100 | Plus |
| os-PC | 413 | CG5993-PC | 51..338 | 75..328 | 281 | 29.1 | Plus |
| os-PB | 413 | CG5993-PB | 51..338 | 75..328 | 281 | 29.1 | Plus |
| os-PA | 413 | CG5993-PA | 51..338 | 75..328 | 281 | 29.1 | Plus |
