Clone BO33987 Report

Search the DGRC for BO33987

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:339
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptGr2a-RB
Protein status:BO33987.pep: Imported from assembly
Sequenced Size:1264

Clone Sequence Records

BO33987.complete Sequence

1264 bp assembled on 2013-05-22

GenBank Submission: KX798790

> BO33987.complete
GAAGTTATCAGTCGACATGGACACGCTGAGAGCTCTGGAGCCGCTGCACC
GCGCCTGCCAGGTGTGCAACCTATGGCCCTGGCGCCTCGCCCCCCCGCCA
GACTCGGAGGGCATCCTGCTCCGGCGATCGCGCTGGCTGGAGCTGTACGG
TTGGACCGTGCTGATAGCGGCCACCTCCTTCACCGTGTACGGCCTCTTCC
AGGAGAGCAGCGTAGAAGAGAAACAGGACTCGGAGTCCACCATCTCGAGC
ATAGGTCACACGGTTGACTTCATTCAGCTGGTGGGCATGCGGGTGGCTCA
TCTGGCTGCCCTGCTGGAGGCCCTGTGGCAGCGGCAGGCGCAGCGAGGCT
TCTTTGCGGAGCTAGGCGAGATCGATCGCCTGCTGTCCAAGGCGTTGAGG
GTGGATGTGGAGGCTATGCGCATCAATATGCGTCGCCAGACGTCGCGCCG
AGCTGTGTGGATCCTGTGGGGCTATGCGGTTAGCCAACTCCTTATCCTGG
GCGCCAAGCTGCTCTCCCGCGGAGACAGATTCCCGATCTACTGGATCAGC
TACTTGCTGCCACTGCTTGTGTGCGGATTGCGTTACTTTCAGATCTTCAA
CGCCACTCAGCTCGTGCGCCAGCGCCTGGATGTGCTCCTAGTGGCCTTGC
AGCAGCTTCAGCTGCACCAGAAAGGGCCCGCAGTGGATACTGTGCTTGAG
GAGCAGGAGGATCTGGAAGAAGCAGCAATGGATAGACTGATCGCTGTCAG
ACTCGTCTACCAACGGGTGTGGGCCCTAGTGGCCTTGCTAAACCGCTGCT
ACGGGCTCTCCATGTTGATGCAGGTGGGCAACGACTTCCTGGCTATCACC
TCCAACTGCTACTGGATGTTCCTCAACTTCCGCCAGTCGGCGGCCTCGCC
CTTCGACATCCTGCAAATCGTGGCCAGTGGCGTATGGTCTGCCCCCCACT
TGGGTAACGTGCTCGTCCTCTCACTGCTTTGCGACCGAACGGCCCAGTGC
GCGTCTCGTCTTGCCCTGTGCCTGCACCAGGTAAGCGTGGATTTAAGGAA
TGAGAGCCACAATGCTCTGATAACCCAGTTCTCGCTGCAGCTACTCCACC
AGCGGCTCCACTTCAGCGCCGCTGGCTTCTTCAACGTGGACTGCACCCTT
CTCTATACGATCGTGGGAGCCACTACCACGTACTTGATAATCCTGATTCA
GTTTCACATGAGCGAATCCACCATCGGCAGTGATTCCAACGGACAGGCAA
GCTTTCTAGACCAT

BO33987.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
Gr2a-RB 1233 CG18531-PB 1..1230 17..1246 6150 100 Plus
Gr2a-RC 1287 CG18531-PC 1..1053 17..1069 5265 100 Plus
Gr2a-RC 1287 CG18531-PC 1107..1284 1069..1246 890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
Gr2a-RB 1508 CG18531-RB 198..1432 12..1246 6160 99.9 Plus
Gr2a-RC 1562 CG18531-RC 198..1255 12..1069 5275 99.9 Plus
futsch-RE 22255 CG34387-RE 21267..22255 12..1000 4930 99.9 Plus
Gr2a-RC 1562 CG18531-RC 1309..1486 1069..1246 890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1452698..1453687 12..1001 4935 99.9 Plus
X 23542271 X 1453875..1453965 1069..1159 455 100 Plus
X 23542271 X 1454014..1454101 1159..1246 440 100 Plus
X 23542271 X 1453753..1453821 1001..1069 345 100 Plus
Blast to na_te.dros performed on 2014-11-28 13:43:23 has no hits.

BO33987.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 12:06:36 Download gff for BO33987.complete
Subject Subject Range Query Range Percent Splice Strand
Gr2a-RB 1..1230 17..1248 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:13:08 Download gff for BO33987.complete
Subject Subject Range Query Range Percent Splice Strand
Gr2a-RB 203..1432 17..1248 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:32 Download gff for BO33987.complete
Subject Subject Range Query Range Percent Splice Strand
Gr2a-RB 203..1432 17..1248 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:32 Download gff for BO33987.complete
Subject Subject Range Query Range Percent Splice Strand
X 1452703..1453686 17..1000 100 -> Plus
X 1453753..1453821 1001..1069 100 -> Plus
X 1453876..1453965 1070..1159 100 -> Plus
X 1454015..1454101 1160..1248 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:13:08 Download gff for BO33987.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1346736..1347719 17..1000 100 -> Plus
arm_X 1347786..1347854 1001..1069 100 -> Plus
arm_X 1347909..1347998 1070..1159 100 -> Plus
arm_X 1348048..1348134 1160..1248 97   Plus

BO33987.pep Sequence

Translation from 16 to 1264

> BO33987.pep
MDTLRALEPLHRACQVCNLWPWRLAPPPDSEGILLRRSRWLELYGWTVLI
AATSFTVYGLFQESSVEEKQDSESTISSIGHTVDFIQLVGMRVAHLAALL
EALWQRQAQRGFFAELGEIDRLLSKALRVDVEAMRINMRRQTSRRAVWIL
WGYAVSQLLILGAKLLSRGDRFPIYWISYLLPLLVCGLRYFQIFNATQLV
RQRLDVLLVALQQLQLHQKGPAVDTVLEEQEDLEEAAMDRLIAVRLVYQR
VWALVALLNRCYGLSMLMQVGNDFLAITSNCYWMFLNFRQSAASPFDILQ
IVASGVWSAPHLGNVLVLSLLCDRTAQCASRLALCLHQVSVDLRNESHNA
LITQFSLQLLHQRLHFSAAGFFNVDCTLLYTIVGATTTYLIILIQFHMSE
STIGSDSNGQASFLDH

BO33987.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
Gr2a-PB 410 CG18531-PB 1..410 1..410 2104 100 Plus
Gr2a-PC 428 CG18531-PC 1..428 1..410 2075 95.8 Plus
Gr23a-PC 370 CG15396-PC 62..369 76..405 188 25.4 Plus
Gr32a-PA 461 CG14916-PA 287..451 233..402 176 28.2 Plus
Gr28b-PD 440 CG13788-PD 81..421 73..409 172 24.9 Plus