BO33988.complete Sequence
1780 bp assembled on 2013-05-22
GenBank Submission: KX795762
> BO33988.complete
GAAGTTATCAGTCGACATGAATAAGGAAGAAAATTCCTCCGAAACACGAC
CATCTTCTCAAGAACTCCACAGTCCGCAGCGGCATTGCTACACTCCGCCG
CCGGCGCCGATGCACGGACAGGCGCCTCCACCTACATCAACGGGCGTGGC
CCCGCCCACACAGCCACCGCCCCCTCATCCCGCCGCCCCAAACGTGCCCA
ATGGTCGATTGCTGAGCTGGAATCACAGTGCCGCTGCAGCTGCTGCGGCG
GCGGCAGCCCAAGCGGCAGCCAACTCCATGAACCACTCGTCGGCGGCGGA
GGGTTCATCGATGACCCGGATTAAGGGTCAGAACCTGGGCCTCATCTGCG
TGGTGTGCGGCGACACCAGCTCGGGAAAGCACTACGGAATCCTAGCCTGC
AATGGCTGCTCCGGATTCTTCAAACGCAGCGTGCGGCGGAAACTCATTTA
TCGCTGCCAGGCGGGAACGGGACGCTGTGTGGTGGACAAAGCTCATCGGA
ATCAATGCCAGGCCTGCAGGCTCAAGAAGTGCCTTCAAATGGGAATGAAC
AAGGACGCCGTGCAAAATGAGCGACAGCCCCGCAACACGGCCACTATACG
GCCGGAGACTCTGCGGGAGATGGAGCACGGACGGGCGCTGCGAGAGGCCG
CCGTGGCCGTCGGGGTTTTCGGACCACCCGTGCTACTGTCTCCGCCCTGC
TACGGCTCCGGACTCCTGCCGCCGCCCTCACTGGGCAGTTTGCCGACGGG
ACGATTGCTGCACCACAACCACCTCACCTCCTCAATGCAATTGGCTGCGA
ACCACATGGGCGCCGGCAGCTTTCCCATGTTCAACGCAGCCGGCGTGCAC
CACTCGCCCAAGGAAAAGGCCTACGGCATGGAGATGGCCACCAGTGGCAA
TGTCTCCCACTCGACCAACTCGAGCAGCAACCACTCCATCGACCCGAGCT
CACCGGCGCCGGAAAACGCCAAGGAGATAAACATCGCCGGCGGCAGTGTC
TCCTCCGTCAGCTCTTCCAGTCCCACCATGGAAAATGACAATGATGACGA
CTCCATAGATGTAACCAACGACAACGAGGAGCCGCATGCAGTCAGCAGAT
CGGATTCGAGTTTCATTATGCCGCAGTTCATGTCGCCCAATCTGTACACC
CATCAACACGAAACAGTTTACGAGACAAGTGCCCGGCTGCTCTTCATGGC
CGTCAAGTGGGCCAAGAACCTGCCCAGCTTTGCAAGACTTTCCTTTCGGG
ATCAGGTAATTTTGCTGGAGGAGTCCTGGTCGGAGCTGTTCCTGCTGAAC
GCAATCCAATGGTGCATTCCCCTGGATCCCACCGGCTGCGCCCTCTTCTC
GGTGGCGGAGCACTGCAATAATCTAGAGAACAATGCCAATGGCGACACTT
GCATAACAAAGGAGGAGCTGGCGGCGGATGTGCGAACGCTCCACGAGATC
TTCTGCAAATACAAGGCGGTGCTGGTGGACCCCGCTGAATTCGCGTGCCT
CAAGGCGATAGTTCTCTTCCGGCCGGAAACGCGCGGACTTAAAGATCCGG
CGCAGATAGAGAATCTTCAGGATCAGGCGCACGTGATGCTGTCGCAGCAC
ACAAAGACGCAGTTCACCGCCCAGATAGCCAGATTCGGACGACTCCTTCT
CATGCTGCCGTTGCTGCGCATGATTAGCTCCCACAAGATTGAGTCCATCT
ATTTTCAGCGCACTATTGGGAACACGCCCATGGAAAAGGTGCTCTGTGAC
ATGTATAAGAACGCAAGCTTTCTAGACCAT
BO33988.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr51-RC | 1749 | CG16801-PC | 1..1746 | 17..1762 | 8715 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr51-RC | 2089 | CG16801-RC | 277..2022 | 17..1762 | 8715 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:43:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15333575..15333967 | 61..453 | 1965 | 100 | Plus |
| 2R | 25286936 | 2R | 15337893..15338210 | 729..1046 | 1590 | 100 | Plus |
| 2R | 25286936 | 2R | 15338398..15338609 | 1046..1257 | 1060 | 100 | Plus |
| 2R | 25286936 | 2R | 15339138..15339317 | 1583..1762 | 885 | 99.4 | Plus |
| 2R | 25286936 | 2R | 15338909..15339077 | 1416..1584 | 845 | 100 | Plus |
| 2R | 25286936 | 2R | 15338683..15338847 | 1253..1417 | 825 | 100 | Plus |
| 2R | 25286936 | 2R | 15337347..15337462 | 557..672 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 15336083..15336187 | 453..557 | 525 | 100 | Plus |
| 2R | 25286936 | 2R | 15337751..15337807 | 672..728 | 285 | 100 | Plus |
| 2R | 25286936 | 2R | 15331601..15331646 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:43:27 has no hits.
BO33988.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 12:06:38 Download gff for
BO33988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr51-RC | 1..1746 | 17..1764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:13:10 Download gff for
BO33988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr51-RC | 277..2022 | 17..1764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:35 Download gff for
BO33988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr51-RC | 277..2022 | 17..1764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:35 Download gff for
BO33988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15331601..15331646 | 17..62 | 100 | -> | Plus |
| 2R | 15333577..15333967 | 63..453 | 100 | -> | Plus |
| 2R | 15336084..15336187 | 454..557 | 100 | -> | Plus |
| 2R | 15337348..15337462 | 558..672 | 100 | -> | Plus |
| 2R | 15337752..15337807 | 673..728 | 100 | -> | Plus |
| 2R | 15337893..15338210 | 729..1046 | 100 | -> | Plus |
| 2R | 15338399..15338607 | 1047..1255 | 100 | -> | Plus |
| 2R | 15338686..15338847 | 1256..1417 | 100 | -> | Plus |
| 2R | 15338911..15339075 | 1418..1582 | 100 | -> | Plus |
| 2R | 15339138..15339317 | 1583..1764 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:13:10 Download gff for
BO33988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11219106..11219151 | 17..62 | 100 | -> | Plus |
| arm_2R | 11221082..11221472 | 63..453 | 100 | -> | Plus |
| arm_2R | 11223589..11223692 | 454..557 | 100 | -> | Plus |
| arm_2R | 11224853..11224967 | 558..672 | 100 | -> | Plus |
| arm_2R | 11225257..11225312 | 673..728 | 100 | -> | Plus |
| arm_2R | 11225398..11225715 | 729..1046 | 100 | -> | Plus |
| arm_2R | 11225904..11226112 | 1047..1255 | 100 | -> | Plus |
| arm_2R | 11226191..11226352 | 1256..1417 | 100 | -> | Plus |
| arm_2R | 11226416..11226580 | 1418..1582 | 100 | -> | Plus |
| arm_2R | 11226643..11226822 | 1583..1764 | 98 | | Plus |
BO33988.pep Sequence
Translation from 16 to 1780
> BO33988.pep
MNKEENSSETRPSSQELHSPQRHCYTPPPAPMHGQAPPPTSTGVAPPTQP
PPPHPAAPNVPNGRLLSWNHSAAAAAAAAAAQAAANSMNHSSAAEGSSMT
RIKGQNLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG
TGRCVVDKAHRNQCQACRLKKCLQMGMNKDAVQNERQPRNTATIRPETLR
EMEHGRALREAAVAVGVFGPPVLLSPPCYGSGLLPPPSLGSLPTGRLLHH
NHLTSSMQLAANHMGAGSFPMFNAAGVHHSPKEKAYGMEMATSGNVSHST
NSSSNHSIDPSSPAPENAKEINIAGGSVSSVSSSSPTMENDNDDDSIDVT
NDNEEPHAVSRSDSSFIMPQFMSPNLYTHQHETVYETSARLLFMAVKWAK
NLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHC
NNLENNANGDTCITKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVL
FRPETRGLKDPAQIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLL
RMISSHKIESIYFQRTIGNTPMEKVLCDMYKNASFLDH
BO33988.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr51-PC | 582 | CG16801-PC | 1..582 | 1..582 | 3082 | 100 | Plus |
| dsf-PB | 691 | CG9019-PB | 333..682 | 210..580 | 462 | 33.1 | Plus |
| dsf-PA | 691 | CG9019-PA | 333..682 | 210..580 | 462 | 33.1 | Plus |
| svp-PC | 281 | CG11502-PC | 57..266 | 355..579 | 364 | 40.9 | Plus |
| svp-PB | 543 | CG11502-PB | 319..528 | 355..579 | 364 | 40.9 | Plus |
| dsf-PB | 691 | CG9019-PB | 9..183 | 107..314 | 336 | 39.3 | Plus |
| dsf-PA | 691 | CG9019-PA | 9..183 | 107..314 | 336 | 39.3 | Plus |
