BO34008.complete Sequence
1567 bp assembled on 2013-05-17
GenBank Submission: KX795231
> BO34008.complete
GAAGTTATCAGTCGACATGTTGCTGTACACCAAGGAACTTGTGATTCCGC
GGCCGAGACCAGGACTACTGCGCTTCAGGAACAATCCGCGTGGTATTAAG
TTTCGGGAAAAACTGTGCAACTCCTTTGCCCACTCCAACATCCATGGGAT
GCAGCACGTCTTCGGGGAGCAGCATCTCTGGCAGCGCTGCCTGTGGCTCG
CCATCGTCCTGGGAGCGGTGATCACAGGATTCAGTCTGTACACCGTGCTG
ATGCATCGCCACAGCGAGCAGCTCCTGGTCAGCCTGATAGAGACCACCCA
GTTGCCAGTGTACCACATCGACTTTCCAGCTGTGGCCGTTTGCCCCTGGA
ATCATTTCAACTGGCAGAGGGCTCCGTCGGCATTTATCCGCTTTCTGCCA
CGTCATCCGAATGCCGAGCTCCGGGAAACATTTCGCCAGCTACTCGCCAG
TATGGACATTATGAACTTCTCCAACTTTAACCGGATACGGATTCTGACCA
AACGAAATCTGACGGGAATTAGTTATCTAAAAATGACGGACCTGATGAAC
TTCATGACCTATAGATGCGATGAACTCTTCGTCGCCGATTCCTGCGTCTT
CGATGAGACTCCCTACGACTGCTGCAAACTTTTCGTACGGGAGCAGACGG
TGAAGGGCCAGTGCTTGGTCTTCAACTCCATGATTTCGGAGAACTCGCGC
AAAAAGCACCTGATTAACCAGTTCTATCCCCACAAGCTGAGCACCGCTGG
CGAGGATTCGGGCCTGAAGTTCACGATCAATGCAAGCTACTCCTTTATGA
ACAACATAGACGCTCTGACTCCATTTGGAATGAATCTCATGATTAAGGAA
CCACGCCAGTGGTCCAATGAAATGATGTACCACCTGTACCCGGATACGGA
GAACTTTGTTGCTGTGCATCCGCTGGTCACGGAAACCTCTCCAAATACCT
ATGAAATGAGTCCCAAAAAAAGACGTTGCTACTTTGATGATGAAAAGAAC
CCTACCTTCCAGAACACTTCGTTGACTTATAACCGCGAAAACTGCCTGGT
GGTGTGCCTCCACTTAGTTGTGTGGAAGACCTGCCAGTGCTCGCTGCCAG
CTTTTCTGCCTCCCATTGATGGAGTTCCGGAATGTGGAATCAACGATGCA
CAATGCTTGGGCAACAATTCCGATATATTCACTTACGTGAAGATGGGTGA
TCAGGAGAAATACATTAACGACTCACGACAGGGTCACTTTTGTGATTGCC
CAGACAATTGCAATTCACGGCTGTACGAAATGTCACTTAATGTGCGCAAA
TTGGATTACCCAAAAAACTCGACAGATCAATTGATAAAAGCCCAGGTTTA
TTATGGCCAACGTGTCATGACCAAAATCATTACGAAACTCAAGTACACCA
ATATAGATTTACTGGCCAACTTTGGCGGGATCATAAGTCTGTATATAGGG
GCCTCCGTCATGAGTTTTATAGAGCTTTTATTTGTGCTGGGAAAACTGAT
GTGGGGTTTCATCAGAGATGCGCGCATAAAATTGAAAGAGTATACTAAGG
CAAGCTTTCTAGACCAT
BO34008.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk19-RA | 1536 | CG18287-PA | 1..1533 | 17..1549 | 7665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk19-RA | 1536 | CG18287-RA | 1..1533 | 17..1549 | 7665 | 100 | Plus |
| Bub3-RB | 1362 | CG7581-RB | 1149..1362 | 1549..1336 | 1070 | 100 | Minus |
| Bub3-RA | 1236 | CG7581-RA | 1149..1236 | 1549..1462 | 440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29672451..29673274 | 12..835 | 4105 | 99.9 | Plus |
| 3R | 32079331 | 3R | 29673980..29674220 | 1309..1549 | 1205 | 100 | Plus |
| 3R | 32079331 | 3R | 29673732..29673922 | 1118..1308 | 955 | 100 | Plus |
| 3R | 32079331 | 3R | 29673340..29673493 | 836..989 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 29673554..29673683 | 989..1118 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:37:22 has no hits.
BO34008.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-17 15:32:00 Download gff for
BO34008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppk19-RA | 6..1533 | 22..1551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:10:25 Download gff for
BO34008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppk19-RA | 6..1533 | 22..1551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:24 Download gff for
BO34008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppk19-RA | 6..1533 | 22..1551 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:24 Download gff for
BO34008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29672461..29673274 | 22..835 | 100 | -> | Plus |
| 3R | 29673340..29673492 | 836..988 | 100 | -> | Plus |
| 3R | 29673554..29673683 | 989..1118 | 100 | -> | Plus |
| 3R | 29673733..29673922 | 1119..1308 | 100 | -> | Plus |
| 3R | 29673980..29674220 | 1309..1551 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:10:25 Download gff for
BO34008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25498183..25498996 | 22..835 | 100 | -> | Plus |
| arm_3R | 25499062..25499214 | 836..988 | 100 | -> | Plus |
| arm_3R | 25499276..25499405 | 989..1118 | 100 | -> | Plus |
| arm_3R | 25499455..25499644 | 1119..1308 | 100 | -> | Plus |
| arm_3R | 25499702..25499942 | 1309..1551 | 99 | | Plus |
BO34008.pep Sequence
Translation from 16 to 1567
> BO34008.pep
MLLYTKELVIPRPRPGLLRFRNNPRGIKFREKLCNSFAHSNIHGMQHVFG
EQHLWQRCLWLAIVLGAVITGFSLYTVLMHRHSEQLLVSLIETTQLPVYH
IDFPAVAVCPWNHFNWQRAPSAFIRFLPRHPNAELRETFRQLLASMDIMN
FSNFNRIRILTKRNLTGISYLKMTDLMNFMTYRCDELFVADSCVFDETPY
DCCKLFVREQTVKGQCLVFNSMISENSRKKHLINQFYPHKLSTAGEDSGL
KFTINASYSFMNNIDALTPFGMNLMIKEPRQWSNEMMYHLYPDTENFVAV
HPLVTETSPNTYEMSPKKRRCYFDDEKNPTFQNTSLTYNRENCLVVCLHL
VVWKTCQCSLPAFLPPIDGVPECGINDAQCLGNNSDIFTYVKMGDQEKYI
NDSRQGHFCDCPDNCNSRLYEMSLNVRKLDYPKNSTDQLIKAQVYYGQRV
MTKIITKLKYTNIDLLANFGGIISLYIGASVMSFIELLFVLGKLMWGFIR
DARIKLKEYTKASFLDH
BO34008.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk19-PA | 511 | CG18287-PA | 1..511 | 1..511 | 2757 | 100 | Plus |
| ppk20-PB | 564 | CG7577-PB | 38..499 | 40..491 | 653 | 32.1 | Plus |
| ppk20-PC | 565 | CG7577-PC | 38..500 | 40..491 | 636 | 31.2 | Plus |
| ppk20-PA | 587 | CG7577-PA | 78..522 | 57..491 | 623 | 31.6 | Plus |
| ppk7-PA | 573 | CG9499-PA | 42..494 | 40..491 | 530 | 26.3 | Plus |
