BO34042.complete Sequence
952 bp assembled on 2013-04-19
GenBank Submission: KX797516
> BO34042.complete
GAAGTTATCAGTCGACATGCGACGTCCGCTCTCGCCGACATTGGCCAAGT
TGGCCGAGCAGGAGGTGAACGAGACGCCCGACAGGATTCAGCAGGATATT
ATCATCCTGCGCGTGTGGATTCGCCAGCAGCCGCATCTGCGCGCCCGCAC
AGATGTGGACTTCCTGATCGCCTTCCTCAGACGCTGCCGTTACAGCCTGG
AGGAGACCAAGCGCCGGATCGATCGCTACTTCACCCACTACAATCTATTT
CCGGAGATCATGAATAACCGCTGTGTGACTCAAAGACTTCTGGACATCAA
TCGGATGGGAGTTTGTCTCTATCCGGATATGCCAAAGGGTGATAGCCGTA
GTGCCATGTTTATAGCCCGTTTCGGTCATTTCGATCCCAATTTGTACATG
CTGCGGGAGATCTATCATTTTTCGTCGATGGCCATGGAGGTGATTGCGCT
GGAGAATGACTATGCCAGCTTGGCGGGAATCTGCGAAATAATTGACCTCG
AGGGCGTCAACTCGGATAAGATGCGACGCTTTGATAGGGTTCTATTTCGC
AAATGGTGGAACTGGCTCTACAATTGCAGCCCCCTTAAAGTGAAGGAGAT
GTATATCATAAATATGCCCAAGGATATTCAGGGTACCGTCATGTTTCTGT
ACAACGTGCTTAGCATGCAAGTCAACTATCCGATACGCGTGCTGAAGAAC
AGCGAAGAGCTAATCGAGCACATTGGCAAGGAATCGCTGCCGGAGGAGTA
TGGCGGTACCAATGGACATTTGGGTGAATGTGTGGCCTACATGGAGGACC
TGTTGAATAGCTATCGTGGTTATTTCGAGCAGGACTGCAACTACGGGACC
ATTGAGGAGCTGCGGCACGGCGAAATAGCCACATATGAGGCGGAATTTGG
AGCCAATGGCTCCTTCCGTCGTCTCAATTGGGATGCAAGCTTTCTAGACC
AT
BO34042.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:21:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10301-RB | 921 | CG10301-PB | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10301-RB | 1000 | CG10301-RB | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:21:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23710516..23710889 | 309..682 | 1870 | 100 | Plus |
| 3R | 32079331 | 3R | 23710158..23710450 | 17..309 | 1465 | 100 | Plus |
| 3R | 32079331 | 3R | 23711004..23711256 | 682..934 | 1265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:21:59 has no hits.
BO34042.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:51:55 Download gff for
BO34042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10301-RB | 1..918 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:47 Download gff for
BO34042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10301-RB | 1..918 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:27:00 Download gff for
BO34042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10301-RB | 1..918 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:27:00 Download gff for
BO34042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23710158..23710450 | 17..309 | 100 | -> | Plus |
| 3R | 23710517..23710889 | 310..682 | 100 | -> | Plus |
| 3R | 23711005..23711256 | 683..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:47 Download gff for
BO34042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19535880..19536172 | 17..309 | 100 | -> | Plus |
| arm_3R | 19536239..19536611 | 310..682 | 100 | -> | Plus |
| arm_3R | 19536727..19536978 | 683..936 | 99 | | Plus |
BO34042.pep Sequence
Translation from 16 to 952
> BO34042.pep
MRRPLSPTLAKLAEQEVNETPDRIQQDIIILRVWIRQQPHLRARTDVDFL
IAFLRRCRYSLEETKRRIDRYFTHYNLFPEIMNNRCVTQRLLDINRMGVC
LYPDMPKGDSRSAMFIARFGHFDPNLYMLREIYHFSSMAMEVIALENDYA
SLAGICEIIDLEGVNSDKMRRFDRVLFRKWWNWLYNCSPLKVKEMYIINM
PKDIQGTVMFLYNVLSMQVNYPIRVLKNSEELIEHIGKESLPEEYGGTNG
HLGECVAYMEDLLNSYRGYFEQDCNYGTIEELRHGEIATYEAEFGANGSF
RRLNWDASFLDH
BO34042.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10301-PB | 306 | CG10301-PB | 1..306 | 1..306 | 1638 | 100 | Plus |
| CG12926-PA | 313 | CG12926-PA | 10..313 | 3..306 | 540 | 36.5 | Plus |
| CG30339-PA | 308 | CG30339-PA | 5..308 | 3..306 | 529 | 35.2 | Plus |
| CG10300-PA | 311 | CG10300-PA | 6..311 | 3..306 | 496 | 35.3 | Plus |
| CG33966-PA | 310 | CG33966-PA | 5..310 | 3..306 | 492 | 35 | Plus |
