BO34053.complete Sequence
862 bp assembled on 2013-04-19
> BO34053.complete
GAAGTTATCAGTCGACATGTCGCGAAATCAATTGCCGGATTCGTCGTCTT
CACCGCCCATTAGCCATTTACCCTTCCACAATTTCGACGATGATCTGATT
AACGATTTGCCCTCCTGCATTTATGCGGGTCAGCATCAAGGCGGAGGCGC
CACCGGTGGAGGTGGTGGATCGGGAGGTGGCGGTGGCAGTTCTGGGCTGC
GTCTGAGCTCCAACAACCTGCGTCACATCCAGCAGCATTATATGCAACAT
AGCGGAGAAAATCTGCTCGACTCCTCTACCAATCCAATGGGGGTGCACAA
TTCCGGGGGAGGAGCACCCTTAATGTGCAACAGCCCCAGTGCCAGCAGCA
GTGGAGGAGGGTGCGGCAACGCAGGATCTGCTACTCCTGGCGGTGCAGGT
GGTCCCAATCCTGGATATGGATCCGTGGGAGCTGCAACTGCGTCCAGCTA
CAAAATGCAGCGACAGGCGGCCAATGTGCGGGAAAGGAAACGCATCCAGA
GTAGCATCAATTCGGCTTTCGATGAGCTAAGGGTCCATGTACCCACCTTT
CCGTACGAGAAACGTCTGAGCAAGATCGACACTCTGCGGCTTGCCATCGC
CTATATATCTCTGCTCCGTGAGGTACTACAAACCGACTACGATCCCCTAA
CCTATGTGGAGAAGTGTCTGCGCGGAGAGATCAAAGCGGATAGGGCTAAT
TGGAATACGAGTGATCTCACAGCTCGTCTGTCGTGGATCAACTGGGAGAA
CCTCGGAGTACATCCTGGTAGGCGAACCCTGCTTACCTCGTTGGCTCTCT
CCTCGGAACCCATGTGCGGAGCTCATTGCGGAATGCCGGCAAGCTTTCTA
GACCATTCGGGG
BO34053.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer2-RB | 825 | CG5952-PB | 1..822 | 17..838 | 4110 | 100 | Plus |
| Fer2-RE | 822 | CG5952-PE | 1..819 | 17..838 | 4030 | 99.6 | Plus |
| Fer2-RC | 840 | CG5952-PC | 1..837 | 17..838 | 3925 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer2-RB | 1336 | CG5952-RB | 93..914 | 17..838 | 4110 | 100 | Plus |
| Fer2-RE | 1333 | CG5952-RE | 93..911 | 17..838 | 4030 | 99.6 | Plus |
| Fer2-RC | 1351 | CG5952-RC | 93..929 | 17..838 | 3925 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16150307..16150552 | 501..256 | 1230 | 100 | Minus |
| 3R | 32079331 | 3R | 16149971..16150184 | 713..500 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 16150614..16150809 | 257..62 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 16149791..16149916 | 838..713 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 16151174..16151220 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:20:53 has no hits.
BO34053.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:36:38 Download gff for
BO34053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer2-RB | 123..950 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:14 Download gff for
BO34053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer2-RB | 123..950 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:26:38 Download gff for
BO34053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer2-RB | 93..920 | 17..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:26:38 Download gff for
BO34053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16149785..16149915 | 714..846 | 96 | <- | Minus |
| 3R | 16149971..16150182 | 502..713 | 100 | <- | Minus |
| 3R | 16150307..16150550 | 258..501 | 100 | <- | Minus |
| 3R | 16150614..16150807 | 64..257 | 100 | <- | Minus |
| 3R | 16151174..16151220 | 17..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:14 Download gff for
BO34053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11975507..11975637 | 714..846 | 96 | <- | Minus |
| arm_3R | 11975693..11975904 | 502..713 | 100 | <- | Minus |
| arm_3R | 11976029..11976272 | 258..501 | 100 | <- | Minus |
| arm_3R | 11976336..11976529 | 64..257 | 100 | <- | Minus |
| arm_3R | 11976896..11976942 | 17..63 | 100 | | Minus |
BO34053.pep Sequence
Translation from 16 to 862
> BO34053.pep
MSRNQLPDSSSSPPISHLPFHNFDDDLINDLPSCIYAGQHQGGGATGGGG
GSGGGGGSSGLRLSSNNLRHIQQHYMQHSGENLLDSSTNPMGVHNSGGGA
PLMCNSPSASSSGGGCGNAGSATPGGAGGPNPGYGSVGAATASSYKMQRQ
AANVRERKRIQSSINSAFDELRVHVPTFPYEKRLSKIDTLRLAIAYISLL
REVLQTDYDPLTYVEKCLRGEIKADRANWNTSDLTARLSWINWENLGVHP
GRRTLLTSLALSSEPMCGAHCGMPASFLDHSG
BO34053.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer2-PB | 274 | CG5952-PB | 1..274 | 1..274 | 1462 | 100 | Plus |
| Fer2-PC | 279 | CG5952-PC | 1..279 | 1..274 | 1442 | 97.8 | Plus |
| Fer2-PE | 273 | CG5952-PE | 1..273 | 1..274 | 1441 | 99.3 | Plus |
| Fer2-PD | 283 | CG5952-PD | 1..283 | 1..274 | 1437 | 96.5 | Plus |
| Fer1-PA | 251 | CG33323-PA | 76..140 | 142..207 | 211 | 63.6 | Plus |
