BO34057.complete Sequence
1231 bp assembled on 2013-04-19
GenBank Submission: KX794111
> BO34057.complete
GAAGTTATCAGTCGACATGCTGCAAAATGTGTGCCGCGTGTGTGCCAGCA
GCACGGACAACTCGAAATCGTTGAAACTATTTAACAGCGGCGCCTGCAAA
GTGCTGCAACAAATCAATTTGCTCACCGGTGTTCTGCTGCAATGCGAACC
CGGTTTACCCGACTGGATGTGCGAGACCTGCCAGACGGATTTGAAAAGCG
CCATATCCTTTCGTGATCGCTGCTTGAGGAGTCAGAAGATCTTTGAAGAG
TCGCTGGTCAGGAATGAAGAGGACACATTCCGCTCCTCAGTTCGTCGCAG
TGCCCGTTCCCAAAGACAGCGGCATGAAGACACCGCTCCAAAGACGCCAG
CAAGTCCGCTGGAGGTAATGATTAAGCTGGAGAGCCTGAGCAATGGCGAT
GAGGAGGATGATGGCATCGATCACCTAGACTCCTGCAACGAAGCAGACAT
GGAGCTGGCCATTAAAGCGATGTCCAGCTCTACCGAAGATGATGGAACTA
CCTCACCGGTCAGATTGAAAAGAACCCGACGTCGGGGACTTAAGAAAGGC
GGGAAAGGTGAAAATCGCACAAAGGTTACGCTTCCAGTTTTCTTTTGCGA
TCAGTGCGGCAACAATATTACAGGGAAGTCCTCCTTCGACCGTCACCTAC
GCAAACACAGCGGAATTAGGCCCTTTCAGTGCGAACTCTGCCCCGCCCGC
TTCCTGTCCTCCGGTGAGCTGAAAGGACACCAAGTGATGCACACTGGAGA
TCGCAAGTTCCAGTGTCGTTACTGTGACCGCACCTACGTCAACTACAGTG
GTCGCCTGCGTCACGAGCGGACCCACACAAATGATCGACCCTTTATTTGT
GCGCAGTGCGGCAAGAGCTTTACCAATTCCTACATCCTCAAGAACCACAT
GCTTATCCACACGGGCGAGCGCCTGTTCAGATGTGAGCTGTGCCATCGAT
CCTTTGCGCGACCCACCCACTTGAAGACTCACTTCCGCTCTAACACTCAT
AAGCACAACTTGGAGAAATCGATGGCAGACGCGGGTGGAGTTCAGCTGTC
ACCATCCCAGTCAGCGGATCAGGTCAAATTCGTGACGGAAAAGGAGCCAG
AAGCAGAGGCGGATGCCTTTACGATAGAAGTGCCTTTGCCCGCGGAGCAG
GAGCAGGATGAGTCTTTGGGCCTGGCTGCTCTGGAAACATCCACTCTAAT
GTATAGTACAAACGCAAGCTTTCTAGACCAT
BO34057.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:20:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8159-RB | 1200 | CG8159-PB | 1..1197 | 17..1213 | 5970 | 99.9 | Plus |
| CG11762-RA | 939 | CG11762-PA | 721..828 | 812..919 | 240 | 81.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:21:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8159-RB | 1328 | CG8159-RB | 75..1271 | 17..1213 | 5970 | 99.9 | Plus |
| CG11762-RA | 1141 | CG11762-RA | 726..833 | 812..919 | 240 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8727109..8727657 | 136..684 | 2730 | 99.8 | Plus |
| 3R | 32079331 | 3R | 8728028..8728313 | 928..1213 | 1430 | 100 | Plus |
| 3R | 32079331 | 3R | 8727726..8727971 | 685..930 | 1230 | 100 | Plus |
| 3R | 32079331 | 3R | 8726928..8727047 | 17..136 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 8726315..8726422 | 812..919 | 240 | 81.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:20:58 has no hits.
BO34057.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:39:01 Download gff for
BO34057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8159-RB | 75..1271 | 17..1215 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:16 Download gff for
BO34057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8159-RB | 75..1271 | 17..1215 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:26:39 Download gff for
BO34057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8159-RB | 75..1271 | 17..1215 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:26:39 Download gff for
BO34057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8726928..8727047 | 17..136 | 100 | -> | Plus |
| 3R | 8727110..8727657 | 137..684 | 99 | -> | Plus |
| 3R | 8727726..8727971 | 685..930 | 100 | -> | Plus |
| 3R | 8728031..8728313 | 931..1215 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:16 Download gff for
BO34057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4552650..4552769 | 17..136 | 100 | -> | Plus |
| arm_3R | 4552832..4553379 | 137..684 | 99 | -> | Plus |
| arm_3R | 4553448..4553693 | 685..930 | 100 | -> | Plus |
| arm_3R | 4553753..4554035 | 931..1215 | 99 | | Plus |
BO34057.pep Sequence
Translation from 16 to 1231
> BO34057.pep
MLQNVCRVCASSTDNSKSLKLFNSGACKVLQQINLLTGVLLQCEPGLPDW
MCETCQTDLKSAISFRDRCLRSQKIFEESLVRNEEDTFRSSVRRSARSQR
QRHEDTAPKTPASPLEVMIKLESLSNGDEEDDGIDHLDSCNEADMELAIK
AMSSSTEDDGTTSPVRLKRTRRRGLKKGGKGENRTKVTLPVFFCDQCGNN
ITGKSSFDRHLRKHSGIRPFQCELCPARFLSSGELKGHQVMHTGDRKFQC
RYCDRTYVNYSGRLRHERTHTNDRPFICAQCGKSFTNSYILKNHMLIHTG
ERLFRCELCHRSFARPTHLKTHFRSNTHKHNLEKSMADAGGVQLSPSQSA
DQVKFVTEKEPEAEADAFTIEVPLPAEQEQDESLGLAALETSTLMYSTNA
SFLDH
BO34057.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8159-PB | 399 | CG8159-PB | 1..399 | 1..399 | 2113 | 100 | Plus |
| ranshi-PA | 346 | CG9793-PA | 5..339 | 5..335 | 646 | 39 | Plus |
| M1BP-PA | 418 | CG9797-PA | 9..394 | 2..335 | 636 | 34.7 | Plus |
| CG11762-PA | 312 | CG11762-PA | 1..309 | 1..334 | 613 | 38.2 | Plus |
| CG8145-PB | 370 | CG8145-PB | 1..324 | 1..333 | 596 | 39.1 | Plus |
