BO34060.complete Sequence
1177 bp assembled on 2013-04-19
GenBank Submission: KX797314
> BO34060.complete
GAAGTTATCAGTCGACATGACACGCATTACTTGGAGAGGTCACTCCACTC
AGGAGTTGCTATCGATTTTGCGGCTTCGTTGGTCATATATGAAGCACTGC
TGGCACTCCTTAACTTTCAACGCCCACATGAACTCCTCCTACGCCTCGGA
CGTCTGCCTGACCCCTATTTTTTGGTTTGTGGACAACTATACTCACTGCC
TAGGACCGTTTTTTGTGGTTGGCGTGGCTGCCTTGACGACTTCAGTCGTT
AGTATTGCCTATTGGATTGGCTTGCCCTTTTGGTGGGCCAAAAGTCAGTT
GGTGACCTACTTCCTCCTCATTGTGGGCAACTGGCTGCTGCTCAATGTGG
TTTTCCACTACGTTATGGCTGTGATCACGCCGGCTGGTCATCCGCCAGAG
GGCGTGTCCCTGGTAGAAGCGGTTAGCATGTGCGGCAAGTGCATAGCTCC
CAAACCACCGAGGACTCATCACTGCTCCATCTGCAATCGCTGCATACTTA
AGATGGATCACCATTGTCCTTGGCTCAACAATTGCGTGGGTTATGGTAAT
CATCGGTACTTCTTCCTCTACATGACGTACACCACTCTGGGTTGTCTGTT
TCTTATTTTGTTTGGCTTGGAGATTGGCCACAAATACCTGTGGCTGGATC
ATGGTGAAAACTGGACGGAAATTGAGCCCTTGGAGGGGCAGCCAGTCAAG
TTTAACCTCAGTGGACACATCATTCCAGTGACACATCCGAATGAGTATGA
TGAATTTGTGCTGCCTCCAGCCGTGCACAATCTTCCAACACCCATTGTGG
ACACAGATGCCGCTTCGCCCGGTCGACGACGAGCGCTTTGGTTCATGGCG
TTCACAAACGTTGCCGTGGTCTTGGCTCTCGGTAGCCTCTCCATCTGGCA
CGCCAAGCTAATCACTCGTGGCGAGACCAGTGTGGAGGCTCACATCAACG
AAGCTGAGCGAAAACGGCACCTCCAGCAACAACGCATTTATATTAATCCT
TATAACTTTGGCACCAAAAAGAACTGGAAGCTGTTCTTGGGTCTGGTGCG
GGGCAGATCCTTTTGGCGAACTGTGCTGCTTCCCTCCTGGCACAAACCCG
AAGGTACTGGGCTGAGTTTCCACACGGTAAATGATGCTCCCTTCGAGGAC
GAGTGGCCAGCAAGCTTTCTAGACCAT
BO34060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5880-RA | 1146 | CG5880-PA | 1..1143 | 17..1159 | 5715 | 100 | Plus |
| CG8314-RA | 882 | CG8314-PA | 401..476 | 465..540 | 200 | 84.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5880-RA | 1526 | CG5880-RA | 139..1281 | 17..1159 | 5715 | 100 | Plus |
| CG8314-RA | 1280 | CG8314-RA | 541..616 | 465..540 | 200 | 84.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:20:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27117858..27118287 | 730..1159 | 2150 | 100 | Plus |
| 3R | 32079331 | 3R | 27117212..27117522 | 208..518 | 1555 | 100 | Plus |
| 3R | 32079331 | 3R | 27117583..27117794 | 519..730 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 27117005..27117152 | 61..208 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 27116883..27116926 | 17..60 | 220 | 100 | Plus |
| 2R | 25286936 | 2R | 15990486..15990561 | 540..465 | 200 | 84.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:20:46 has no hits.
BO34060.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:36:04 Download gff for
BO34060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5880-RA | 146..1288 | 17..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:12 Download gff for
BO34060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5880-RA | 139..1281 | 17..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:26:36 Download gff for
BO34060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5880-RA | 139..1281 | 17..1161 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:26:36 Download gff for
BO34060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27116883..27116926 | 17..60 | 100 | -> | Plus |
| 3R | 27117005..27117152 | 61..208 | 100 | -> | Plus |
| 3R | 27117213..27117522 | 209..518 | 100 | -> | Plus |
| 3R | 27117583..27117794 | 519..730 | 100 | -> | Plus |
| 3R | 27117859..27118287 | 731..1161 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:12 Download gff for
BO34060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22942605..22942648 | 17..60 | 100 | -> | Plus |
| arm_3R | 22942727..22942874 | 61..208 | 100 | -> | Plus |
| arm_3R | 22942935..22943244 | 209..518 | 100 | -> | Plus |
| arm_3R | 22943305..22943516 | 519..730 | 100 | -> | Plus |
| arm_3R | 22943581..22944009 | 731..1161 | 99 | | Plus |
BO34060.pep Sequence
Translation from 16 to 1177
> BO34060.pep
MTRITWRGHSTQELLSILRLRWSYMKHCWHSLTFNAHMNSSYASDVCLTP
IFWFVDNYTHCLGPFFVVGVAALTTSVVSIAYWIGLPFWWAKSQLVTYFL
LIVGNWLLLNVVFHYVMAVITPAGHPPEGVSLVEAVSMCGKCIAPKPPRT
HHCSICNRCILKMDHHCPWLNNCVGYGNHRYFFLYMTYTTLGCLFLILFG
LEIGHKYLWLDHGENWTEIEPLEGQPVKFNLSGHIIPVTHPNEYDEFVLP
PAVHNLPTPIVDTDAASPGRRRALWFMAFTNVAVVLALGSLSIWHAKLIT
RGETSVEAHINEAERKRHLQQQRIYINPYNFGTKKNWKLFLGLVRGRSFW
RTVLLPSWHKPEGTGLSFHTVNDAPFEDEWPASFLDH
BO34060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5880-PA | 381 | CG5880-PA | 1..381 | 1..381 | 2132 | 100 | Plus |
| CG5196-PB | 395 | CG5196-PB | 5..139 | 89..213 | 235 | 37.2 | Plus |
| CG5196-PA | 427 | CG5196-PA | 37..171 | 89..213 | 235 | 37.2 | Plus |
| CG1407-PC | 227 | CG1407-PC | 127..193 | 135..201 | 225 | 50.7 | Plus |
| CG1407-PB | 338 | CG1407-PB | 127..193 | 135..201 | 225 | 50.7 | Plus |
