BO34068.complete Sequence
726 bp assembled on 2013-04-19
> BO34068.complete
GAAGTTATCAGTCGACATGGCCGATCATAACGAAGATGAAGCTGTTGGCG
GTGACCTAAACAACAATATAACAGCAAATGGGCAGGAGGAAGTGCGTCAG
CCGGAGCAGCCGCAGAACGAACTGCTGGACATGGTTTTCACGTTGGAAAG
CGAAAAACAGGCACTACTAGAGGAGTCTCGCAAACGGATCGGAGCGCTCC
GCAAAGACTTTGAGGAAGCCAAGGCGGAAAATGAGCGTTTAAAGCGGAGA
GTGGTCCAGTTGGAGCAGTCGCTCAAGCAGTCCGTCATGCTGGGCGGCAC
AGATGCTCCCAAATCACGACAAGAGCAGGAGGAGCTGCTTCTAAAGGCCA
AAACCCTGCTGTTCGAGAAGACCAAGGTGAACAAACAGCAGGAGCAGCAG
ATATCAGTGCTTAGGACACAAGTAGACTCGATTAAGGATGTGCTGCAGGT
GACCAAGGACATGTTGCAGCTAAAGACCGCCGAATGTGATCACACGCAGG
CTCGTCTGGAGAAGAGCCAGCAGTGGATCAAGGCGGAGCAAGACAAGTGT
GTGCTCACGGAGAAGAAACTAGCCATCTCCAAAGGAGTGTATGACAAGCT
GCGTTCGGAGTACGACACCCAGTCACAGATATTCAAGGATCTTAAGTCCG
CGTACGAGCAGAAGGTCAAGGTTCTCACCAAGGCTTTGGCAGAAGCCAAG
AAAGCAAGCTTTCTAGACCATTCGTG
BO34068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:21:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5376-RA | 690 | CG5376-PA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5376-RA | 812 | CG5376-RA | 74..760 | 17..703 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22488210..22488635 | 638..213 | 2130 | 100 | Minus |
3R | 32079331 | 3R | 22488684..22488882 | 215..17 | 995 | 100 | Minus |
3R | 32079331 | 3R | 22488085..22488152 | 703..636 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:21:15 has no hits.
BO34068.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:41:40 Download gff for
BO34068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5376-RA | 74..765 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:25 Download gff for
BO34068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5376-RA | 74..765 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:26:44 Download gff for
BO34068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5376-RA | 74..765 | 17..710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:26:44 Download gff for
BO34068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22488080..22488150 | 638..710 | 95 | <- | Minus |
3R | 22488211..22488633 | 215..637 | 100 | <- | Minus |
3R | 22488685..22488882 | 17..214 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:25 Download gff for
BO34068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18313802..18313872 | 638..710 | 95 | <- | Minus |
arm_3R | 18313933..18314355 | 215..637 | 100 | <- | Minus |
arm_3R | 18314407..18314604 | 17..214 | 100 | | Minus |
BO34068.pep Sequence
Translation from 16 to 724
> BO34068.pep
MADHNEDEAVGGDLNNNITANGQEEVRQPEQPQNELLDMVFTLESEKQAL
LEESRKRIGALRKDFEEAKAENERLKRRVVQLEQSLKQSVMLGGTDAPKS
RQEQEELLLKAKTLLFEKTKVNKQQEQQISVLRTQVDSIKDVLQVTKDML
QLKTAECDHTQARLEKSQQWIKAEQDKCVLTEKKLAISKGVYDKLRSEYD
TQSQIFKDLKSAYEQKVKVLTKALAEAKKASFLDHS
BO34068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:10:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5376-PA | 229 | CG5376-PA | 1..229 | 1..229 | 1132 | 100 | Plus |