Clone BO34068 Report

Search the DGRC for BO34068

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:340
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG5376-RA
Protein status:BO34068.pep: Imported from assembly
Sequenced Size:726

Clone Sequence Records

BO34068.complete Sequence

726 bp assembled on 2013-04-19

> BO34068.complete
GAAGTTATCAGTCGACATGGCCGATCATAACGAAGATGAAGCTGTTGGCG
GTGACCTAAACAACAATATAACAGCAAATGGGCAGGAGGAAGTGCGTCAG
CCGGAGCAGCCGCAGAACGAACTGCTGGACATGGTTTTCACGTTGGAAAG
CGAAAAACAGGCACTACTAGAGGAGTCTCGCAAACGGATCGGAGCGCTCC
GCAAAGACTTTGAGGAAGCCAAGGCGGAAAATGAGCGTTTAAAGCGGAGA
GTGGTCCAGTTGGAGCAGTCGCTCAAGCAGTCCGTCATGCTGGGCGGCAC
AGATGCTCCCAAATCACGACAAGAGCAGGAGGAGCTGCTTCTAAAGGCCA
AAACCCTGCTGTTCGAGAAGACCAAGGTGAACAAACAGCAGGAGCAGCAG
ATATCAGTGCTTAGGACACAAGTAGACTCGATTAAGGATGTGCTGCAGGT
GACCAAGGACATGTTGCAGCTAAAGACCGCCGAATGTGATCACACGCAGG
CTCGTCTGGAGAAGAGCCAGCAGTGGATCAAGGCGGAGCAAGACAAGTGT
GTGCTCACGGAGAAGAAACTAGCCATCTCCAAAGGAGTGTATGACAAGCT
GCGTTCGGAGTACGACACCCAGTCACAGATATTCAAGGATCTTAAGTCCG
CGTACGAGCAGAAGGTCAAGGTTCTCACCAAGGCTTTGGCAGAAGCCAAG
AAAGCAAGCTTTCTAGACCATTCGTG

BO34068.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5376-RA 690 CG5376-PA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5376-RA 812 CG5376-RA 74..760 17..703 3435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22488210..22488635 638..213 2130 100 Minus
3R 32079331 3R 22488684..22488882 215..17 995 100 Minus
3R 32079331 3R 22488085..22488152 703..636 340 100 Minus
Blast to na_te.dros performed on 2014-11-28 13:21:15 has no hits.

BO34068.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:41:40 Download gff for BO34068.complete
Subject Subject Range Query Range Percent Splice Strand
CG5376-RA 74..765 17..710 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:25 Download gff for BO34068.complete
Subject Subject Range Query Range Percent Splice Strand
CG5376-RA 74..765 17..710 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:26:44 Download gff for BO34068.complete
Subject Subject Range Query Range Percent Splice Strand
CG5376-RA 74..765 17..710 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:26:44 Download gff for BO34068.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22488080..22488150 638..710 95 <- Minus
3R 22488211..22488633 215..637 100 <- Minus
3R 22488685..22488882 17..214 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:25 Download gff for BO34068.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18313802..18313872 638..710 95 <- Minus
arm_3R 18313933..18314355 215..637 100 <- Minus
arm_3R 18314407..18314604 17..214 100   Minus

BO34068.pep Sequence

Translation from 16 to 724

> BO34068.pep
MADHNEDEAVGGDLNNNITANGQEEVRQPEQPQNELLDMVFTLESEKQAL
LEESRKRIGALRKDFEEAKAENERLKRRVVQLEQSLKQSVMLGGTDAPKS
RQEQEELLLKAKTLLFEKTKVNKQQEQQISVLRTQVDSIKDVLQVTKDML
QLKTAECDHTQARLEKSQQWIKAEQDKCVLTEKKLAISKGVYDKLRSEYD
TQSQIFKDLKSAYEQKVKVLTKALAEAKKASFLDHS

BO34068.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5376-PA 229 CG5376-PA 1..229 1..229 1132 100 Plus