BO34077.complete Sequence
1102 bp assembled on 2013-04-19
GenBank Submission: KX797398
> BO34077.complete
GAAGTTATCAGTCGACATGACCAACGCCATGGATATTGTGAAGAACGGCA
GTGCCAACGGATCCGTGGATGGCAGCAATGATGAGTCGCGCACCAATTTG
ATTGTCAACTATCTGCCGCAAACCATGACGCAGGAGGAGATGCGATCGCT
CTTCTCCAGCATCGGTGAGCTCGAGAGTTGCAAACTGGTGCGTGATAAAG
TCTCAGGTAATTTGGTCTTGCCAGCATCGTTGACCGCTCTCAATCCGGCA
TTGCAGCAAGGTCAGAGTCTGGGCTATGGATTTGTTAATTACGTCAGGGC
CGAGGATGCTGAGAAGGCTGTGAACACCCTGAACGGCCTGCGTTTGCAGA
ATAAGGTTATTAAAGTATCATATGCCCGTCCAAGCTCAGAATCTATTAAG
GGTGCTAATTTATATGTATCGGGTCTTCCGAAAAATCTATCACAACCAGA
CTTGGAGGGGATGTTTGCTTCGTTTGGCAAAATAATTACATCTCGTATAC
TCTGTGATAATATTTCTGGTCTATCGAAGGGTGTCGGTTTTATTCGCTTC
GATCAGCGCAACGAAGCCGAGCGAGCCATCCAGGAGTTGAATGGCAAGAC
CCCGAAAGGATATGCCGAACCGATCACCGTCAAGTTCGCCAACAATCCGA
GCAATAGCGCCAAGGCTCAAATTGCCCCGCCCCTTACCGCCTACTTGACA
CCACAGGCGGCAGCGGCCACTCGCCGTTTGGCCGGAGCTCTGCCCTCCGC
CGGTCGCATTAGGTACTCACCGCTGGCTGGCGATCTATTGGCCAATTCGA
TTTTACCGGGAAATGCCATGACTGGATCGGGATGGTGCATATTCGTCTAT
AACCTGGCCCCGGAGACCGAGGAGAACGTGCTGTGGCAGCTATTCGGGCC
ATTCGGTGCCGTTCAATCGGTGAAGGTGATCCGGGATCTGCAGACCAGCA
AGTGCAAGGGATTCGGATTCGTGACCATGACCAACTACGATGAGGCCGTG
GTGGCCATTCAGTCGCTGAATGGTTATACCCTGGGCAATCGGGTGCTGCA
GGTCAGCTTTAAGACTAACAAGACCAAAACCACTGCAAGCTTTCTAGACC
AT
BO34077.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:21:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fne-RE | 1071 | CG4396-PE | 1..1068 | 17..1084 | 5325 | 99.9 | Plus |
| fne-RH | 1071 | CG4396-PH | 1..1068 | 17..1084 | 5325 | 99.9 | Plus |
| fne-RG | 1071 | CG4396-PG | 1..1068 | 17..1084 | 5325 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:21:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fne-RE | 4682 | CG4396-RE | 2410..3477 | 17..1084 | 5325 | 99.9 | Plus |
| fne-RH | 7579 | CG4396-RH | 1582..2649 | 17..1084 | 5325 | 99.9 | Plus |
| fne-RG | 7113 | CG4396-RG | 1116..2183 | 17..1084 | 5325 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12945162..12945487 | 759..1084 | 1630 | 100 | Plus |
| X | 23542271 | X | 12943191..12943452 | 259..520 | 1295 | 99.6 | Plus |
| X | 23542271 | X | 12943512..12943758 | 518..764 | 1235 | 100 | Plus |
| X | 23542271 | X | 12942658..12942856 | 17..215 | 995 | 100 | Plus |
| 2L | 23513712 | 2L | 2963223..2963376 | 924..1077 | 395 | 83.8 | Plus |
| X | 23542271 | X | 517802..518035 | 1071..838 | 375 | 77.4 | Minus |
| 2L | 23513712 | 2L | 2963040..2963136 | 833..929 | 275 | 85.6 | Plus |
| X | 23542271 | X | 12943085..12943132 | 215..262 | 240 | 100 | Plus |
| 2L | 23513712 | 2L | 2962579..2962720 | 512..653 | 230 | 77.5 | Plus |
| X | 23542271 | X | 518722..518808 | 169..83 | 195 | 81.6 | Minus |
| 2L | 23513712 | 2L | 2961737..2961914 | 259..436 | 185 | 73.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:21:28 has no hits.
BO34077.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:44:22 Download gff for
BO34077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fne-RA | 1614..2681 | 17..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:32 Download gff for
BO34077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fne-RG | 1116..2183 | 17..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:26:50 Download gff for
BO34077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fne-RG | 1116..2183 | 17..1086 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:26:50 Download gff for
BO34077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12942658..12942856 | 17..215 | 100 | -> | Plus |
| X | 12943086..12943130 | 216..260 | 100 | -> | Plus |
| X | 12943193..12943450 | 261..518 | 99 | -> | Plus |
| X | 12943513..12943756 | 519..762 | 100 | -> | Plus |
| X | 12945166..12945487 | 763..1086 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:32 Download gff for
BO34077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12836691..12836889 | 17..215 | 100 | -> | Plus |
| arm_X | 12837119..12837163 | 216..260 | 100 | -> | Plus |
| arm_X | 12837226..12837483 | 261..518 | 99 | -> | Plus |
| arm_X | 12837546..12837789 | 519..762 | 100 | -> | Plus |
| arm_X | 12839199..12839520 | 763..1086 | 99 | | Plus |
BO34077.pep Sequence
Translation from 16 to 1102
> BO34077.pep
MTNAMDIVKNGSANGSVDGSNDESRTNLIVNYLPQTMTQEEMRSLFSSIG
ELESCKLVRDKVSGNLVLPASLTALNPALQQGQSLGYGFVNYVRAEDAEK
AVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEGMF
ASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYA
EPITVKFANNPSNSAKAQIAPPLTAYLTPQAAAATRRLAGALPSAGRIRY
SPLAGDLLANSILPGNAMTGSGWCIFVYNLAPETEENVLWQLFGPFGAVQ
SVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSLNGYTLGNRVLQVSFKT
NKTKTTASFLDH
BO34077.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fne-PE | 356 | CG4396-PE | 1..356 | 1..356 | 1804 | 100 | Plus |
| fne-PH | 356 | CG4396-PH | 1..356 | 1..356 | 1804 | 100 | Plus |
| fne-PG | 356 | CG4396-PG | 1..356 | 1..356 | 1804 | 100 | Plus |
| fne-PB | 356 | CG4396-PB | 1..356 | 1..356 | 1804 | 100 | Plus |
| fne-PA | 356 | CG4396-PA | 1..356 | 1..356 | 1804 | 100 | Plus |
