Clone BO34082 Report

Search the DGRC for BO34082

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:340
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptTotF-RA
Protein status:BO34082.pep: Imported from assembly
Sequenced Size:411

Clone Sequence Records

BO34082.complete Sequence

411 bp assembled on 2013-04-19

GenBank Submission: KX797439

> BO34082.complete
GAAGTTATCAGTCGACATGAAGACAGTCATTCTATTTGGCTTCCTGCTGG
CACTTCTTGGATATTTGGAAGCAGAACATGCACAGAGTGATCCTGAATTC
ACGGCCAAGGCACGTCAAATGCTCGCAGTCTTCGGCAACTCAGAGGTCGA
TAGATACACCAAGTCCCGAAATTTGCCCGCATTGATTGAGTTCTACGAGA
AGTACTCCAGTCGTCTGCCACTGACTGTCCAGGATCGGACCTATGCCAAC
AATGTGATCAGGAGGTACCGGGCACACAACAACCAACAGGTCGATGGTGT
TCCTGCTCAGGGCGGAGTTGGTGTGGTGTTCGCGCTACTTCTTCCTTTCG
CTGTGTCAATTGTGGAAGGAATCGCCAAGGCGATCAGAGAAGCAAGCTTT
CTAGACCATTT

BO34082.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
TotF-RA 378 CG31691-PA 1..375 17..391 1875 100 Plus
Victoria-RA 405 CG33117-PA 118..245 86..213 190 76.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
TotF-RA 506 CG31691-RA 46..420 17..391 1875 100 Plus
Victoria-RA 522 CG33117-RA 118..245 86..213 190 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19911901..19912253 391..39 1765 100 Minus
2L 23513712 2L 19913215..19913342 213..86 190 76.6 Minus
Blast to na_te.dros performed on 2014-11-28 13:21:19 has no hits.

BO34082.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:43:27 Download gff for BO34082.complete
Subject Subject Range Query Range Percent Splice Strand
TotF-RA 46..420 17..393 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:27 Download gff for BO34082.complete
Subject Subject Range Query Range Percent Splice Strand
TotF-RA 46..420 17..393 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:26:46 Download gff for BO34082.complete
Subject Subject Range Query Range Percent Splice Strand
TotF-RA 46..420 17..393 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:26:46 Download gff for BO34082.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19911897..19912252 40..393 99 <- Minus
2L 19912310..19912332 17..39 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:27 Download gff for BO34082.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19911897..19912252 40..393 99 <- Minus
arm_2L 19912310..19912332 17..39 100   Minus

BO34082.pep Sequence

Translation from 16 to 409

> BO34082.pep
MKTVILFGFLLALLGYLEAEHAQSDPEFTAKARQMLAVFGNSEVDRYTKS
RNLPALIEFYEKYSSRLPLTVQDRTYANNVIRRYRAHNNQQVDGVPAQGG
VGVVFALLLPFAVSIVEGIAKAIREASFLDH

BO34082.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
TotF-PA 125 CG31691-PA 1..125 1..125 626 100 Plus
Victoria-PA 134 CG33117-PA 16..116 1..100 284 57.4 Plus
TotM-PB 131 CG14027-PB 10..129 6..123 190 39 Plus
TotM-PA 131 CG14027-PA 10..129 6..123 190 39 Plus