BO34083.complete Sequence
1471 bp assembled on 2013-05-17
GenBank Submission: KX798654
> BO34083.complete
GAAGTTATCAGTCGACATGTACGGAGAAACTACGCTAAATAAAAACCACG
TCATTAAATTTATCAAATTGAAAATTAACAACTGCTTGGGCTGCGATGAA
GTGGAGATAAACTTCTCGAAAGCGGACAATGTACACATTATCATCTACAG
TTTGGTCACGGATATGGCAAAGGACCTACCGGCTGTAACGCCCGTGGCCC
AGGCCATCCTACTCCTCTGCTCCCTGACCTATCCGGATTCAGATAGCCTT
GAAACGATTCCGCAGCTGAAAATTGGCAAGGGAAGTGTCTCGATGAGCTT
CAAAGTGTATCCCGTGAATAAGGAAGAGGAGACGGAGCCAGAGTCGGAGA
GCGACCTGGATGAGGGACCGTCCACCTCGAAACAGGCCCTGGAGCGAATG
GTGCAGCGAGCGGAGCGCAAGGCCAAGGAGGCGTCCACAAGGAACGTACA
TTCCAAAGGCATCTATGTGAACGTAGAGCGAAGATTCGATATGTACTTCG
CCCTGGACACCGTTTCATATTATATAAACGGCGGCAAACGCCAATCGTGC
CCCCTCCCGGAGTTCCACGCCAAGTTCTTTGTGCGGCCCCAGCACTCGAT
CAATCTTCTGAGGCAGCTGCACGAGAAATGCTCCGGGAACTGGCTAAAGG
TCATCCAAAGCGACGGCGATGGAGACGCCTTCAAAAAGTTCAAAGACCCC
GACAGCCCGTTCGAGACCTTTGTAAAGCTGTTCGAAAGTAACCCGATCAA
ACCAAACGATATGATGGGCAAGTTGGCCAAAACATGCCTGCACGTCAACG
AGGCAGTGCGTCTGACGGAGCGAGAATTCATACTGGAGGTCTTCAACCAG
GTGCGCCACATATTCGAGTACATCACGGCCCAGGAGTACACAGTGTGGTT
TCTGGTACCTTGCCTTGGTGACAAAGACCAGCTGCGTTCCAAGACCCTCG
AAGACTTTGATTTGACCAAAGTGCGAACGTCTATTCGTCGAGCCGGTGAT
ACTTCCAACATTTGGTGGGATCATACTGATCACAACATCAAGGACATTCT
ATTGGTGGCCTTCCAATTGGACCTGGCCACCCATGTCAATCAGTCGGTTC
TTGTTATTAGCCATTTGGAAACGCTGGCGGAGTTTTCCACTATGCAATAT
GTGACGGCCTTTTTTATGAACGACTTCTACGCCAAGAAAAACACGGAACC
AAAATGGATCTGCCACCGCTATTTGGAGCGCATCATTGATGTGGCCTTGT
TCCTGGGCGTCATCGTCATCATCGAATACCCAAGTGCCTTCACTCTGTTG
CAGGAGGGTCGCCACTTGATCAAGTGCTTCCAAAAGGAAAATGCTGACTC
CTCCAGAACCTCCCAATGGGAAATATTCGAAGATGTGGTCAAGGAGAACG
AGTCCGACCTCGAGTTTCTCAAGGAGGCCGTGGGCAAAGTCCAGCAGAAC
GTAGCAAGCTTTCTAGACCAT
BO34083.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ord-RB | 1440 | CG3134-PB | 1..1437 | 17..1453 | 7185 | 100 | Plus |
| ord-RA | 1440 | CG3134-PA | 1..1437 | 17..1453 | 7185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ord-RB | 2178 | CG3134-RB | 26..1462 | 17..1453 | 7185 | 100 | Plus |
| ord-RA | 3915 | CG3134-RA | 1763..3199 | 17..1453 | 7185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23273040..23273665 | 693..68 | 3130 | 100 | Minus |
| 2R | 25286936 | 2R | 23272037..23272288 | 1453..1202 | 1260 | 100 | Minus |
| 2R | 25286936 | 2R | 23272727..23272976 | 943..694 | 1250 | 100 | Minus |
| 2R | 25286936 | 2R | 23272487..23272668 | 1123..942 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 23272342..23272420 | 1201..1123 | 395 | 100 | Minus |
| 2R | 25286936 | 2R | 23273720..23273774 | 71..17 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:38:39 has no hits.
BO34083.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-17 15:32:22 Download gff for
BO34083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ord-RA | 502..1938 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:10:58 Download gff for
BO34083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ord-RA | 1763..3199 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:53 Download gff for
BO34083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ord-RA | 1763..3199 | 17..1455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:53 Download gff for
BO34083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23272035..23272288 | 1202..1455 | 99 | <- | Minus |
| 2R | 23272342..23272419 | 1124..1201 | 100 | <- | Minus |
| 2R | 23272487..23272666 | 944..1123 | 100 | <- | Minus |
| 2R | 23272727..23272976 | 694..943 | 100 | <- | Minus |
| 2R | 23273040..23273665 | 68..693 | 100 | <- | Minus |
| 2R | 23273724..23273774 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:10:58 Download gff for
BO34083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19159558..19159811 | 1202..1455 | 99 | <- | Minus |
| arm_2R | 19159865..19159942 | 1124..1201 | 100 | <- | Minus |
| arm_2R | 19160010..19160189 | 944..1123 | 100 | <- | Minus |
| arm_2R | 19160250..19160499 | 694..943 | 100 | <- | Minus |
| arm_2R | 19160563..19161188 | 68..693 | 100 | <- | Minus |
| arm_2R | 19161247..19161297 | 17..67 | 100 | | Minus |
BO34083.pep Sequence
Translation from 16 to 1471
> BO34083.pep
MYGETTLNKNHVIKFIKLKINNCLGCDEVEINFSKADNVHIIIYSLVTDM
AKDLPAVTPVAQAILLLCSLTYPDSDSLETIPQLKIGKGSVSMSFKVYPV
NKEEETEPESESDLDEGPSTSKQALERMVQRAERKAKEASTRNVHSKGIY
VNVERRFDMYFALDTVSYYINGGKRQSCPLPEFHAKFFVRPQHSINLLRQ
LHEKCSGNWLKVIQSDGDGDAFKKFKDPDSPFETFVKLFESNPIKPNDMM
GKLAKTCLHVNEAVRLTEREFILEVFNQVRHIFEYITAQEYTVWFLVPCL
GDKDQLRSKTLEDFDLTKVRTSIRRAGDTSNIWWDHTDHNIKDILLVAFQ
LDLATHVNQSVLVISHLETLAEFSTMQYVTAFFMNDFYAKKNTEPKWICH
RYLERIIDVALFLGVIVIIEYPSAFTLLQEGRHLIKCFQKENADSSRTSQ
WEIFEDVVKENESDLEFLKEAVGKVQQNVASFLDH
BO34083.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ord-PB | 479 | CG3134-PB | 1..479 | 1..479 | 2501 | 100 | Plus |
| ord-PA | 479 | CG3134-PA | 1..479 | 1..479 | 2501 | 100 | Plus |
