BO34101.complete Sequence
1492 bp assembled on 2013-05-14
GenBank Submission: KX793812
> BO34101.complete
GAAGTTATCAGTCGACATGAGAAAGTCAACTAGACTTTTAACTCATTCTC
TATTCGGCCCTGTATTTAAAATTTTGTTTCATAACAAAACAGTTTGTGGA
GGCTGTAATAGGAAAATGCCGAGCCTGGTGAACACGGAAATTGAAGCCGC
GGTCAAGGGCTTCCTGATCGACCAGGAGAAGATGACCGAGGTGGTGGAGC
GCATGACCAAGGAGATAAAGATGGGCCTGGCCAAGGACACGCATGCACGA
GCGGTGATCAAGTGCTTCGTCAGCCATGTGCAAGATCTGCCCACTGGCAA
GGAGCGGGGAAAGTATTTGGCCCTGGATCTGGGTGGCTCTAATTTCAGGG
TGCTTCTGGTGAACCTGATTAGCAACTCGGACGTGGAAACCATGTCGAAG
GGCTATAATTTTCCTCAAACTCTGATGTCCGGATCGGGAAAGGCGCTTTT
CGACTTCCTTGCCGAATGCCTGTCGGAGTTTTGTCACTCCCATGGCCTGG
AGAATGAATCACTGGCTCTGGGCTTCACCTTCTCGTTTCCGCTCCAGCAG
CAGGGACTCTCCAAGGGTATCCTTGTGGCCTGGACCAAAGGATTCAGCTG
CGAAGGCGTGGTGGGCAAGAATGTGGTGAGTCTTCTCCAGGAGGCAATCG
ATCGAAGGGGCGATCTAAAGATCAATACCGTCGCCATTCTCAACGATACG
GTGGGCACTCTGATGTCCTGCGCCTTCTATCATCCCAACTGCCGGATTGG
ATTGATCGTGGGAACCGGCTCCAATGCGTGCTATGTGGAGAAAACAGTAA
ATGCCGAATGCTTCGAAGGATACCAGACCAGTCCCAAGCCATCAATGATA
ATCAACTGCGAGTGGGGCGCCTTTGGGGACAATGGTGTCCTGGAGTTCGT
TCGAACTTCCTACGACAAGGCAGTCGACAAGGTAACACCCAATCCCGGCA
AGCAGACGTTCGAAAAGTGCATATCGGGCATGTATATGGGTGAACTTGTA
CGTTTGGTCATCACCGATATGATTGCCAAGGGTTTTATGTTCCACGGCAT
CATTTCCGAGAAGATCCAGGAGCGATGGAGCTTCAAAACCGCCTATATTT
CCGATGTTGAAAGTGATGCACCTGGCGAGTATCGCAATTGCAATAAGGTC
CTTAGCGAATTGGGCATCTTGGGCTGCCAGGAACCCGACAAAGAGGCCCT
GCGATACATCTGCGAGGCGGTGTCCTCCAGGTCTGCCAAGCTATGTGCCT
GCGGCCTGGTCACCATCATCAACAAGATGAACATCAACGAGGTGGCCATC
GGCATAGACGGTAGCGTGTATCGCTTCCATCCCAAGTACCACGACATGCT
CCAGTACCACATGAAGAAGCTCCTCAAGCCGGGCGTCAAGTTTGAGCTGG
TTGTTTCGGAGGACGGATCCGGAAGAGGAGCAGCTCTCGTGGCGGCCACC
GCAGTCCAGGCCAAAAGCAAGCTCGCAAGCTTTCTAGACCAT
BO34101.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hex-t2-RA | 1461 | CG32849-PA | 1..1458 | 17..1474 | 7230 | 99.7 | Plus |
| Hex-A-RC | 1347 | CG3001-PC | 88..218 | 224..354 | 250 | 79.4 | Plus |
| Hex-A-RB | 1347 | CG3001-PB | 88..218 | 224..354 | 250 | 79.4 | Plus |
| Hex-A-RC | 1347 | CG3001-PC | 801..869 | 940..1008 | 195 | 85.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hex-t2-RA | 1569 | CG32849-RA | 12..1470 | 16..1474 | 7235 | 99.7 | Plus |
| Hex-A-RC | 4139 | CG3001-RC | 911..1041 | 224..354 | 250 | 79.4 | Plus |
| Hex-A-RB | 2512 | CG3001-RB | 696..826 | 224..354 | 250 | 79.4 | Plus |
| Hex-A-RC | 4139 | CG3001-RC | 1624..1692 | 940..1008 | 195 | 85.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:35:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26451379..26452228 | 625..1474 | 4190 | 99.5 | Plus |
| 3R | 32079331 | 3R | 26450682..26451297 | 16..631 | 3080 | 100 | Plus |
| X | 23542271 | X | 9586585..9586715 | 224..354 | 250 | 79.4 | Plus |
| X | 23542271 | X | 9587298..9587366 | 940..1008 | 195 | 85.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:35:55 has no hits.
BO34101.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:50:47 Download gff for
BO34101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-t2-RA | 32..1489 | 17..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:32 Download gff for
BO34101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-t2-RA | 32..1489 | 17..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:38 Download gff for
BO34101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-t2-RA | 13..1470 | 17..1476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:38 Download gff for
BO34101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26450683..26451291 | 17..625 | 100 | -> | Plus |
| 3R | 26451380..26452228 | 626..1476 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:32 Download gff for
BO34101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22276405..22277013 | 17..625 | 100 | -> | Plus |
| arm_3R | 22277102..22277950 | 626..1476 | 99 | | Plus |
BO34101.pep Sequence
Translation from 16 to 1492
> BO34101.pep
MRKSTRLLTHSLFGPVFKILFHNKTVCGGCNRKMPSLVNTEIEAAVKGFL
IDQEKMTEVVERMTKEIKMGLAKDTHARAVIKCFVSHVQDLPTGKERGKY
LALDLGGSNFRVLLVNLISNSDVETMSKGYNFPQTLMSGSGKALFDFLAE
CLSEFCHSHGLENESLALGFTFSFPLQQQGLSKGILVAWTKGFSCEGVVG
KNVVSLLQEAIDRRGDLKINTVAILNDTVGTLMSCAFYHPNCRIGLIVGT
GSNACYVEKTVNAECFEGYQTSPKPSMIINCEWGAFGDNGVLEFVRTSYD
KAVDKVTPNPGKQTFEKCISGMYMGELVRLVITDMIAKGFMFHGIISEKI
QERWSFKTAYISDVESDAPGEYRNCNKVLSELGILGCQEPDKEALRYICE
AVSSRSAKLCACGLVTIINKMNINEVAIGIDGSVYRFHPKYHDMLQYHMK
KLLKPGVKFELVVSEDGSGRGAALVAATAVQAKSKLASFLDH
BO34101.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hex-t2-PA | 486 | CG32849-PA | 1..486 | 1..486 | 2533 | 100 | Plus |
| Hex-A-PC | 448 | CG3001-PC | 10..438 | 50..479 | 1283 | 56.5 | Plus |
| Hex-A-PB | 448 | CG3001-PB | 10..438 | 50..479 | 1283 | 56.5 | Plus |
| Hex-A-PA | 541 | CG3001-PA | 103..531 | 50..479 | 1283 | 56.5 | Plus |
| Hex-C-PA | 454 | CG8094-PA | 1..454 | 37..483 | 1046 | 46.5 | Plus |
