BO34102.complete Sequence
577 bp assembled on 2013-05-14
GenBank Submission: KX794584
> BO34102.complete
GAAGTTATCAGTCGACATGTCAGTCGCTGACACCATTGAATACGTGACCC
TGGGCAATCCTGTCAGCAAGATGGTAGCCTCGTCCGCATCCGCCCTGCTC
CGCACGCTTGGTCTGCGTCCCAAGAAGGTGCCGGTGCAGGAGACGAGTAT
GGCGGTGCTCCCTGCCGCCCACAGCTACGCGCATTCACACGGATCACTCT
ATCGACTGGCCGGCTGCCATTACCACTTCATTCGGCTGGCCGGGATCGTC
GGCGCGTCGGCCATCTTTATGGGCGCCTACTGCAAGTACGTCCTGAAGGA
CGTCAGCGATCCCAAGGAGCAGGTGGACTCGCAGGCCTTTGCTGATGTGG
CCAATCGCATCCACTTTCTGCACTCCTTTGCCATGATGGCCATGCCTCTG
GCCCACTATCCCGTATTCACTGGCACTTTGATGATTACGGGCATGATGCT
TTTCAGCGGCTGCATGTACTACCGCGCTTTGACTGGCGAGAAGCGTCTGC
AACCGTACGCGACCGTCGGAGGATTCTGCCTGATGGCCGCGTGGCTGTCG
CTGGTCCTGGCAAGCTTTCTAGACCAT
BO34102.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4686-RB | 546 | CG4686-PB | 1..543 | 17..559 | 2715 | 100 | Plus |
CG4686-RA | 546 | CG4686-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
CG42395-RD | 540 | CG42395-PD | 159..537 | 181..559 | 665 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:36:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4686-RB | 933 | CG4686-RB | 76..618 | 17..559 | 2715 | 100 | Plus |
CG4686-RA | 1195 | CG4686-RA | 338..880 | 17..559 | 2715 | 100 | Plus |
CG4562-RC | 6512 | CG4562-RC | 5375..5515 | 559..419 | 705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:35:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19864989..19865297 | 110..418 | 1545 | 100 | Plus |
3R | 32079331 | 3R | 19866414..19866554 | 419..559 | 705 | 100 | Plus |
X | 23542271 | X | 9575326..9575704 | 559..181 | 665 | 78.4 | Minus |
3R | 32079331 | 3R | 19864833..19864926 | 17..110 | 470 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 13:35:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1b | 5171 | Rt1b RT1B 5150bp | 2769..2887 | 561..446 | 127 | 60.8 | Minus |
BO34102.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:50:49 Download gff for
BO34102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4686-RA | 377..919 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:35 Download gff for
BO34102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4686-RA | 338..880 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:40 Download gff for
BO34102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4686-RA | 338..880 | 17..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:40 Download gff for
BO34102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19864989..19865297 | 110..418 | 100 | -> | Plus |
3R | 19866414..19866554 | 419..561 | 98 | | Plus |
3R | 19864833..19864925 | 17..109 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:35 Download gff for
BO34102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15690555..15690647 | 17..109 | 100 | -> | Plus |
arm_3R | 15690711..15691019 | 110..418 | 100 | -> | Plus |
arm_3R | 15692136..15692276 | 419..561 | 98 | | Plus |
BO34102.pep Sequence
Translation from 16 to 577
> BO34102.pep
MSVADTIEYVTLGNPVSKMVASSASALLRTLGLRPKKVPVQETSMAVLPA
AHSYAHSHGSLYRLAGCHYHFIRLAGIVGASAIFMGAYCKYVLKDVSDPK
EQVDSQAFADVANRIHFLHSFAMMAMPLAHYPVFTGTLMITGMMLFSGCM
YYRALTGEKRLQPYATVGGFCLMAAWLSLVLASFLDH
BO34102.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:15:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4686-PB | 181 | CG4686-PB | 1..181 | 1..181 | 936 | 100 | Plus |
CG4686-PA | 181 | CG4686-PA | 1..181 | 1..181 | 936 | 100 | Plus |
CG42395-PD | 179 | CG42395-PD | 1..179 | 3..181 | 673 | 69.8 | Plus |