BO34104.complete Sequence
1420 bp assembled on 2013-09-16
GenBank Submission: KX794684
> BO34104.complete
GAAGTTATCAGTCGACATGGCCAAGAAGCTGCCCTCCGATGTGCATCCAG
ATGCGGTCTTCGCCTGCAACGAGCTCGATCTCAGCGAGGTGCAGGTGTAC
GGATTCGATTACGACTACACGCTGGCCTGCTATAAGCCCATCCTGGAGGA
CCTGCTGTACAATCTGGCTCGCGAGATGCTGGTGAAGAGGTTCCGCTACC
CGGAGGACATCCTCCAGCTGGAGTACGAACCGAACTTTGCGGTACGCGGC
CTGCACTACGACGTGGAAAAGGGGCTGCTGGTGAAACTGGACAGTTTCCT
GCAGCTACAGCTGGGCTCGGTATACAGGGGACGTACCAAAGTGGAGGCGG
ATGAGGTGCTGAAGCTCTACCACAACCGCCTGCTGCCTATTGCCTACGTG
GAGGGGCCGAACAATAGCTACAGGCATAACACCAACTCCAAAATGGTGCA
ATTGGCCGACCTGTTTTCTGTACCTGAAATGTGCCTGCTGTGCAATGTAA
TCGAATATTTTGAACGCAATCGAATCGACTACAATCCAGAGATTGTTTTC
CATGACACCAGGACCGCCATGGGCTCCTGCCATCCCATTATGCACGGCAA
GGTGATGCGGAACACTGAGAAGTACATAGAACGAAACCCGAAGCTGGTCA
AGTTCTTCGAGAAGCTGCAGCAGGCGGGCAAGAATCTCTTTCTAGTCACC
AATAGCCCGTACTCGTTTGTAAACTGTGGCATGTCCTTTCTGGTCGGCGC
CAACTGGCGTGATTTCTTCGATGTGGTCATCGTGCAGGCCCGCAAACCAA
AGTTCTTTACGGATGAATCTCGACCAATAAGGCTATTCGACGAGCGAACG
CAGTCACACCTATGGGATCGGGTATTCAAGCTGGAGAAGGGAAAAATCTA
CTACGAGGGTTCGGTGAGACAGCTTCAAGAGCTGAAGGGCTGGCGTGGTC
ACTCTGTGCTCTATTTCGGAGATCATCCGTACAGCGACCTAGCAGATGTT
ACTCTGAAGCACAGCTGGAGGACAGGAGCCATTATTAGCGAACTGGCTCA
CGAAATTAAAACCCTCAATCGTAAGGACTTCAAGATGAGCGCCAACTGGC
TGCAAATGCTGACGCAGCTCATCGAGGACACCCAGGACGATGATAGCGAG
GCAGCGCAGATCTGCCTAAAGGAGTGGATGGAGGAGCGGGATCAGTTGCG
CAACAAAACGAAGAACGTGTTCAACGAGCAGTTTGGCAGCGTTTTCCGCA
CCTACCACAACCCCACTTACTTCTCAAGACGCCTCTTCCGCTTTGCCGAC
ATCTACACCAGCGACATAACCAACCTGCTCAAGTTCTCCACCACCCACAC
CTTTTATCCCCGACGGGGTGTAATGCCCCACGAATATGCCTCCCACTTTA
TCGCAAGCTTTCTAGACCAT
BO34104.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:45:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1814-RC | 1389 | CG1814-PC | 1..1386 | 17..1402 | 6930 | 100 | Plus |
| CG1814-RA | 1647 | CG1814-PA | 263..1644 | 21..1402 | 6910 | 100 | Plus |
| CG1814-RB | 1230 | CG1814-PB | 1..1227 | 176..1402 | 6135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1814-RC | 1673 | CG1814-RC | 126..1513 | 15..1402 | 6940 | 100 | Plus |
| CG1814-RB | 1880 | CG1814-RB | 339..1720 | 21..1402 | 6910 | 100 | Plus |
| CG1814-RA | 1929 | CG1814-RA | 388..1769 | 21..1402 | 6910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9579962..9580366 | 20..424 | 2025 | 100 | Plus |
| 2R | 25286936 | 2R | 9580451..9580747 | 424..720 | 1485 | 100 | Plus |
| 2R | 25286936 | 2R | 9581485..9581687 | 1200..1402 | 1015 | 100 | Plus |
| 2R | 25286936 | 2R | 9580818..9581005 | 721..908 | 940 | 100 | Plus |
| 2R | 25286936 | 2R | 9581266..9581417 | 1049..1200 | 760 | 100 | Plus |
| 2R | 25286936 | 2R | 9581064..9581206 | 906..1048 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:45:40 has no hits.
BO34104.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:48:36 Download gff for
BO34104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1814-RC | 128..1513 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:32 Download gff for
BO34104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1814-RC | 128..1513 | 17..1404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:32 Download gff for
BO34104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9581486..9581687 | 1201..1404 | 99 | | Plus |
| 2R | 9579961..9580366 | 17..424 | 99 | -> | Plus |
| 2R | 9580452..9580747 | 425..720 | 100 | -> | Plus |
| 2R | 9580818..9581004 | 721..907 | 100 | -> | Plus |
| 2R | 9581066..9581206 | 908..1048 | 100 | -> | Plus |
| 2R | 9581266..9581417 | 1049..1200 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:48:36 Download gff for
BO34104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5468571..5468711 | 908..1048 | 100 | -> | Plus |
| arm_2R | 5467466..5467871 | 17..424 | 99 | -> | Plus |
| arm_2R | 5467957..5468252 | 425..720 | 100 | -> | Plus |
| arm_2R | 5468323..5468509 | 721..907 | 100 | -> | Plus |
| arm_2R | 5468771..5468922 | 1049..1200 | 100 | -> | Plus |
| arm_2R | 5468991..5469192 | 1201..1404 | 99 | | Plus |
BO34104.pep Sequence
Translation from 16 to 1420
> BO34104.pep
MAKKLPSDVHPDAVFACNELDLSEVQVYGFDYDYTLACYKPILEDLLYNL
AREMLVKRFRYPEDILQLEYEPNFAVRGLHYDVEKGLLVKLDSFLQLQLG
SVYRGRTKVEADEVLKLYHNRLLPIAYVEGPNNSYRHNTNSKMVQLADLF
SVPEMCLLCNVIEYFERNRIDYNPEIVFHDTRTAMGSCHPIMHGKVMRNT
EKYIERNPKLVKFFEKLQQAGKNLFLVTNSPYSFVNCGMSFLVGANWRDF
FDVVIVQARKPKFFTDESRPIRLFDERTQSHLWDRVFKLEKGKIYYEGSV
RQLQELKGWRGHSVLYFGDHPYSDLADVTLKHSWRTGAIISELAHEIKTL
NRKDFKMSANWLQMLTQLIEDTQDDDSEAAQICLKEWMEERDQLRNKTKN
VFNEQFGSVFRTYHNPTYFSRRLFRFADIYTSDITNLLKFSTTHTFYPRR
GVMPHEYASHFIASFLDH
BO34104.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1814-PC | 462 | CG1814-PC | 1..462 | 1..462 | 2465 | 100 | Plus |
| CG1814-PA | 548 | CG1814-PA | 88..548 | 2..462 | 2457 | 99.8 | Plus |
| CG1814-PB | 409 | CG1814-PB | 1..409 | 54..462 | 2182 | 100 | Plus |
| CG32549-PD | 581 | CG32549-PD | 29..481 | 14..456 | 491 | 29.8 | Plus |
| CG32549-PF | 612 | CG32549-PF | 60..512 | 14..456 | 491 | 29.8 | Plus |
