BO34105.complete Sequence
1225 bp assembled on 2013-05-14
GenBank Submission: KX794880
> BO34105.complete
GAAGTTATCAGTCGACATGACCCAGCCAAGGATATGCTTTTTAGTTGGAG
CCCTAATCCTCTCCTGCACTTGCGTTTCGTGCTCCAAGGACAAATGCGCT
GTCAACGAACACAACCCAAACTCAAATACCAGCTACGACTTTGTGCCGCA
CATCCTGCACGCCCTGGCGATCCATCGACCCTGCGTAATCGGTGATCCGA
AATGCCTCTGCCATGTGGCGACCATTCAAAGGGATTTGGAACCGTATGTG
GACAAGGGGATTACACCTGAGATGATGGCGCAATCCAAACGATTGGGCAC
TTTTTACCAGATAATCCGTGGACGCATCTATCGCCAGCAGAAGTGCCTGC
ATCCCAAGCGATGTGCCGATGTGGAGGATCTGCTCTTGGACATGGCCAGT
GGTGTGGCAGACCTGGAATTCGTTCTCAATGTGCGCGACTGGCCGCAGGT
GCACTTCCTATCCGGCCTAAGTGGTCCGGTGTTTTCCTATTCCATCACGA
ATCGCCACCTGGACATCATGTACCCAGCATGGTCGTTTTGGACCACCACG
GGACCCATCCTGCAGCACTATCCCCACGGTGTGGGTCGCTGGGACTGGAT
GCGAAAACATTTGGTGGCCAGGGCGTCGGAGTTGCCGTGGAGTGCCAAGC
GCGCTATTGGTTTCTTTAGGGGCTCACGATCCTCGCCAGAACGCGATAGT
CTAGTCAGGCTCTCGCAAAGGCGTCCAGACCTGGTTGATGCCCAGTACAC
GATACTAGCGACGGATGCCGATCCCGTCGAGAAGATGCCTTTGGTCGAGC
ACTGCCAATTTAAGTATCTGTTCAATTTTCGCGGTGTGGCCGCCAGTTTC
CGGCTGCGGCACATACTGCTCTGCCGCTCGCTGGTACTTCATGTTGGCGA
CCAGTGGCAGGAGTTCTTCTACAGCCAACTGAAACCCTGGGTGCATTACG
TTCCCGTGGCCAGCGACGCCGATGTGGATGAGCTGGCGGAGTTGATTCTA
TATCTGCGCGAGCACGACGATCTGGCGGAGGAGATTGCGGAACGGGGACA
GCAGTTCATTTGGCTCCACCTCCGAATGGAGGATGTGCAGTGCTATTGGA
GTAAGATGCTCCAGGAATACGCAAAGTTGCTCACTTATAAAGTGCAACGG
GAGCCGGGACTTCTGGAGGTATCCAACAAGAAAGCGGTGCAGCTGTACCG
CGGAAAAGCAAGCTTTCTAGACCAT
BO34105.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31139-RA | 1194 | CG31139-PA | 1..1191 | 17..1207 | 5955 | 100 | Plus |
| CG31139-RC | 939 | CG31139-PC | 1..936 | 272..1207 | 4680 | 100 | Plus |
| rumi-RB | 951 | CG31152-PB | 568..701 | 812..945 | 325 | 82.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:36:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31139-RA | 1312 | CG31139-RA | 66..1256 | 17..1207 | 5955 | 100 | Plus |
| CG31139-RC | 1308 | CG31139-RC | 66..1252 | 17..1207 | 5860 | 99.7 | Plus |
| rumi-RB | 1530 | CG31152-RB | 922..1055 | 812..945 | 325 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22747746..22748824 | 1207..129 | 5395 | 100 | Minus |
| 3R | 32079331 | 3R | 22748880..22748991 | 128..17 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 22749489..22749622 | 945..812 | 325 | 82.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:36:02 has no hits.
BO34105.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:50:51 Download gff for
BO34105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31139-RA | 66..1252 | 17..1203 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:36 Download gff for
BO34105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31139-RA | 66..1252 | 17..1203 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:43 Download gff for
BO34105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31139-RA | 66..1252 | 17..1203 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:43 Download gff for
BO34105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22747750..22748824 | 129..1203 | 100 | <- | Minus |
| 3R | 22748880..22748991 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:36 Download gff for
BO34105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18573472..18574546 | 129..1203 | 100 | <- | Minus |
| arm_3R | 18574602..18574713 | 17..128 | 100 | | Minus |
BO34105.pep Sequence
Translation from 16 to 1225
> BO34105.pep
MTQPRICFLVGALILSCTCVSCSKDKCAVNEHNPNSNTSYDFVPHILHAL
AIHRPCVIGDPKCLCHVATIQRDLEPYVDKGITPEMMAQSKRLGTFYQII
RGRIYRQQKCLHPKRCADVEDLLLDMASGVADLEFVLNVRDWPQVHFLSG
LSGPVFSYSITNRHLDIMYPAWSFWTTTGPILQHYPHGVGRWDWMRKHLV
ARASELPWSAKRAIGFFRGSRSSPERDSLVRLSQRRPDLVDAQYTILATD
ADPVEKMPLVEHCQFKYLFNFRGVAASFRLRHILLCRSLVLHVGDQWQEF
FYSQLKPWVHYVPVASDADVDELAELILYLREHDDLAEEIAERGQQFIWL
HLRMEDVQCYWSKMLQEYAKLLTYKVQREPGLLEVSNKKAVQLYRGKASF
LDH
BO34105.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:15:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31139-PA | 397 | CG31139-PA | 1..397 | 1..397 | 2143 | 100 | Plus |
| CG31139-PC | 312 | CG31139-PC | 1..312 | 86..397 | 1670 | 100 | Plus |
| rumi-PA | 411 | CG31152-PA | 26..408 | 22..389 | 952 | 47.4 | Plus |
| rumi-PB | 316 | CG31152-PB | 1..313 | 86..389 | 870 | 50.6 | Plus |
