Clone BO34111 Report

Search the DGRC for BO34111

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:341
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG1440-RC
Protein status:BO34111.pep: Imported from assembly
Sequenced Size:1567

Clone Sequence Records

BO34111.complete Sequence

1567 bp assembled on 2013-09-16

GenBank Submission: KX797796

> BO34111.complete
GAAGTTATCAGTCGACATGTACTATTCAAAAGAATCCGTTCAAACTCACA
CAATATCCGGCGAACGTTGCCAATCCCATTTACTTGCAGCTGACAACAAC
AGCGGATCCGGAGGAGGTGGAAGCGGTGGCGGTGGCGCCGGTAACAATAA
CAGTGCCAATAGTGGTAAGAACTCGACGCACAGGTTCGCTGAGACCAGTG
TGATCACCAATCAATTGTTGGAAAAATGGCGGAAAAACTTCTACAGCGAA
CCGAAGAATCTGCTGGCGCAGAACGTCTGCTCACGCGTTGATCCGTTCGA
TGTGTGCCTGTCCAGGAAGGCACTGGAGACCACCAATCATGTGTTCAACT
ACAAGGTGGAAACGGAGGGCAAGCCGGTGACCAATCAAAGGAGCTCCGGC
CGCTGCTGGCTGTTTGCGGCCCTCAACTGCATCCGCCTGCCATTCATGAA
GAACTACAATCTGGACGAGTTCGAATTCTCGCAGGCCTTCCTCTTCTACT
GGGACAAGATCGAGCGTTGCAACTACTTTCTCAACAATGTTGTGAAGACG
GCACAGCGCGGCGAGAAGGTTGATGGTCGTCTGGTGTCGTTCCTGCTACT
CGATCCCACCTCCGATGGCGGCCAGTGGGACATGCTGGTCAATCTGATAA
CCAAACACGGCCTTATGCCAAAGAAATGCTTTCCCGAGAGCTTCAGCTGC
GAGTCCAGCTTACGAATGAACGCCATACTGAAGAGCAAGCTACGGGAGTA
TGCCCGCAATTTGCGCGTGCTGATGGAGAAGAATCCCACGGATGAGGAGA
TCGCCTGCAAGATCCAGGAGCAAATGGCCGAGATCTACAAGGTGGTTGGC
ATTTGCCTGGGCATACCCTCGGAGACCTTCACCTGGGAGTACTATGACAA
GAGCAAGAACTATCAGTCAATCGGACCCGTTAGTTCGCTGGAGTTCTATG
AGCGTTATGTTAAGCCGCATTTCAACGTGGAGGACAAAGTGTGCCTGGTC
ACCGATCCTCGGCCGACGAGTAGCTATGACCAGGCATACACTGTTGACTG
CCTGGGCAACGTGGTTGGCGGTCGACCCGTTCTGTATAACAATCAGTCCG
TCGAACTGCTCCTTGCGGTTGTCACCAAGTCGCTAAAGGCCGGCGAGGCC
GTTTGGTTTGGCTGCGAGGTTAGCAAGCGATTCGCCTCCAAGCAGGGCAT
CGAGGATGTGGATGTCCACGATTTTAAGCTGGTCTTCGACATTGACATAC
AAACGACATTCTCCAAGGCAGACCGCCTGATCTACGGTGAATCGGCCATG
ACCCATGCCATGGTTTTCACCGCCGTATCCGTGGATAAGAGCGGCGTGGC
CCAGAAATTGCGTGTGGAGAACTCGTGGGGTGAGGATCGCGGCGAGAAGG
GCTATCTGGTGATGAACGCCGATTGGTTTAGGGAGTTTGGATTCGAGGTG
GTCGTCGACAAGAAGTACGTGCCCGAGGATGTGTTGCGCGTGTTCGACAT
GGATCCGATCGTACTGCCTGCCTGGGATCCCATGGGTACGCTAGCACAGG
CAAGCTTTCTAGACCAT

BO34111.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-RD 1656 CG1440-PD 121..1653 17..1549 7665 100 Plus
CG1440-RC 1536 CG1440-PC 1..1533 17..1549 7665 100 Plus
CG1440-RA 1467 CG1440-PA 5..1464 90..1549 7300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-RD 2394 CG1440-RD 355..1887 17..1549 7665 100 Plus
CG1440-RC 2040 CG1440-RC 329..1861 17..1549 7665 100 Plus
CG1440-RB 1969 CG1440-RB 331..1790 90..1549 7300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8439036..8439758 17..739 3615 100 Plus
X 23542271 X 8439817..8440294 738..1215 2390 100 Plus
X 23542271 X 8440545..8440757 1337..1549 1065 100 Plus
X 23542271 X 8440361..8440481 1216..1336 605 100 Plus
Blast to na_te.dros performed on 2014-11-28 13:45:33 has no hits.

BO34111.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:48:32 Download gff for BO34111.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RC 329..1861 17..1551 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:28 Download gff for BO34111.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RC 329..1861 17..1551 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:28 Download gff for BO34111.complete
Subject Subject Range Query Range Percent Splice Strand
X 8439036..8439758 17..739 100 -> Plus
X 8439819..8440294 740..1215 100 -> Plus
X 8440361..8440481 1216..1336 100 -> Plus
X 8440545..8440757 1337..1551 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:48:32 Download gff for BO34111.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8333069..8333791 17..739 100 -> Plus
arm_X 8333852..8334327 740..1215 100 -> Plus
arm_X 8334394..8334514 1216..1336 100 -> Plus
arm_X 8334578..8334790 1337..1551 99   Plus

BO34111.pep Sequence

Translation from 16 to 1567

> BO34111.pep
MYYSKESVQTHTISGERCQSHLLAADNNSGSGGGGSGGGGAGNNNSANSG
KNSTHRFAETSVITNQLLEKWRKNFYSEPKNLLAQNVCSRVDPFDVCLSR
KALETTNHVFNYKVETEGKPVTNQRSSGRCWLFAALNCIRLPFMKNYNLD
EFEFSQAFLFYWDKIERCNYFLNNVVKTAQRGEKVDGRLVSFLLLDPTSD
GGQWDMLVNLITKHGLMPKKCFPESFSCESSLRMNAILKSKLREYARNLR
VLMEKNPTDEEIACKIQEQMAEIYKVVGICLGIPSETFTWEYYDKSKNYQ
SIGPVSSLEFYERYVKPHFNVEDKVCLVTDPRPTSSYDQAYTVDCLGNVV
GGRPVLYNNQSVELLLAVVTKSLKAGEAVWFGCEVSKRFASKQGIEDVDV
HDFKLVFDIDIQTTFSKADRLIYGESAMTHAMVFTAVSVDKSGVAQKLRV
ENSWGEDRGEKGYLVMNADWFREFGFEVVVDKKYVPEDVLRVFDMDPIVL
PAWDPMGTLAQASFLDH

BO34111.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-PD 551 CG1440-PD 41..551 1..511 2710 100 Plus
CG1440-PC 511 CG1440-PC 1..511 1..511 2710 100 Plus
CG1440-PA 488 CG1440-PA 2..488 25..511 2581 99.8 Plus
CG1440-PB 368 CG1440-PB 1..368 144..511 1944 100 Plus
CG13423-PA 476 CG13423-PA 4..474 62..509 725 35.4 Plus