Clone BO34116 Report

Search the DGRC for BO34116

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:341
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG16758-RF
Protein status:BO34116.pep: Imported from assembly
Sequenced Size:1018

Clone Sequence Records

BO34116.complete Sequence

1018 bp assembled on 2013-05-14

GenBank Submission: KX797295

> BO34116.complete
GAAGTTATCAGTCGACATGTGCTCCCGCGACTGTTGCTCCGGACCAGGTG
GCTCCAATCGAGGCAACACTTGCTCGGACAAGAAGGGCGCCAAGGCCGGC
AGTCTCACTGGCGAGAAGATCATACCCACTCCACAGAGCCTGCTGTATCC
CTATGAGGTCATCGAGGAGATCGCCGACTTCATTACCAAGGGGTCCGGCA
TGCGCCCCAAGATCGGCATCATCTGCGGCTCTGGGCTAGGCTCATTGGCC
GATATGATCCAGGACCCGAAGATCTTCGAGTATGAGAAGATCCCCAACTT
CCCGGTATCTACAGTTGAGGGCCATGCCGGACGACTGGTGGTCGGCACAC
TCGAGGGCGCCACTGTGATGGCGATGCAGGGCAGGTTCCACTTCTACGAG
GGCTATCCGCTGGCCAAGTGCTCAATGCCGGTTCGCGTGATGAAGCTGTG
CGGTGTGGAATACCTGTTCGCCACCAATGCGGCTGGTGGAATCAATCCAC
GGTTCGCGGTGGGCGACATCATGCTGATGCATGACCATGTCAACATGCTG
GGCTTTGCCGGAAATTCTCCGCTCCAGGGACCCAATGACCCACGCTTCGG
ACCCCGCTTTCCCGCCCTGGTGAACTCGTACAACAAGGACCTAATCAACA
AGGCCATCGAGATCGCCAAGGCCATGGGCATAGAGTCCAACATTCACGTC
GGCGTATACTCCTGTCTGGGTGGTCCCAACTACGAGACCATCGCCGAGCT
GAAGGCCCTGCGCATGATGGGCGTGGATGCGGTGGGCATGTCCACCGTAC
ATGAGGTCATCACTGCACGGCACTGCGACATGAAGGTATTCGCCTTCAGC
CTCATCACAAATAAGTGCGCCACCGAGTACAGCGATAAGAAGGACGATGA
GGCCAACCACGATGAGGTTATGGCTGTGGCCAAGAACAGGCAAAAGGCCT
GCTGCGAACTGGTCTCCCGACTCATCCGGGAAATCCACTTGGCATCCGCT
GCAAGCTTTCTAGACCAT

BO34116.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-RG 1119 CG16758-PG 133..1116 17..1000 4920 100 Plus
CG16758-RF 987 CG16758-PF 1..984 17..1000 4920 100 Plus
CG16758-RE 966 CG16758-PE 82..963 119..1000 4350 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-RG 1617 CG16758-RG 466..1449 17..1000 4920 100 Plus
CG16758-RF 1245 CG16758-RF 94..1077 17..1000 4920 100 Plus
CG16758-RE 1449 CG16758-RE 400..1281 119..1000 4350 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2499689..2500462 918..145 3870 100 Minus
3L 28110227 3L 2502592..2502722 147..17 655 100 Minus
3L 28110227 3L 2499540..2499625 1000..915 430 100 Minus
Blast to na_te.dros performed on 2014-11-28 13:36:14 has no hits.

BO34116.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:50:55 Download gff for BO34116.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RF 94..1077 17..1002 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:42 Download gff for BO34116.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RF 94..1077 17..1002 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:48 Download gff for BO34116.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RF 94..1077 17..1002 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:48 Download gff for BO34116.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2499538..2499623 917..1002 97 <- Minus
3L 2499691..2500462 145..916 100 <- Minus
3L 2502595..2502722 17..144 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:42 Download gff for BO34116.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2499538..2499623 917..1002 97 <- Minus
arm_3L 2499691..2500462 145..916 100 <- Minus
arm_3L 2502595..2502722 17..144 100   Minus

BO34116.pep Sequence

Translation from 16 to 1018

> BO34116.pep
MCSRDCCSGPGGSNRGNTCSDKKGAKAGSLTGEKIIPTPQSLLYPYEVIE
EIADFITKGSGMRPKIGIICGSGLGSLADMIQDPKIFEYEKIPNFPVSTV
EGHAGRLVVGTLEGATVMAMQGRFHFYEGYPLAKCSMPVRVMKLCGVEYL
FATNAAGGINPRFAVGDIMLMHDHVNMLGFAGNSPLQGPNDPRFGPRFPA
LVNSYNKDLINKAIEIAKAMGIESNIHVGVYSCLGGPNYETIAELKALRM
MGVDAVGMSTVHEVITARHCDMKVFAFSLITNKCATEYSDKKDDEANHDE
VMAVAKNRQKACCELVSRLIREIHLASAASFLDH

BO34116.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-PF 328 CG16758-PF 1..328 1..328 1729 100 Plus
CG16758-PG 372 CG16758-PG 45..372 1..328 1729 100 Plus
CG16758-PH 396 CG16758-PH 45..396 1..328 1694 93.2 Plus
CG16758-PE 321 CG16758-PE 1..321 1..328 1561 91.8 Plus
CG16758-PD 329 CG16758-PD 13..329 8..328 1497 91 Plus