Clone BO34117 Report

Search the DGRC for BO34117

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:341
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptGstD9-RA
Protein status:BO34117.pep: Imported from assembly
Sequenced Size:688

Clone Sequence Records

BO34117.complete Sequence

688 bp assembled on 2013-05-14

GenBank Submission: KX798438

> BO34117.complete
GAAGTTATCAGTCGACATGTTGGACTTCTACTATATGCTCTACTCGGCAC
CTTGCCGTTCCATCCTGATGACGGCCCGTGCCCTGGGATTGGAGCTGAAC
AAGAAGCAGGTGGATCTGGATGCCGGCGAGCATCTTAAGCCGGAATTTGT
AAAGATCAATCCTCAGCATACGATTCCCACGCTGGTTGACGATGGTTTCG
CCATCTGGGAGTCGAGGGCTATACTGATTTATCTGGCCGAGAAGTACGAT
AAAGATGGCTCCCTTTATCCCAAGGATCCCCAGCAGAGAGCCGTGATCAA
TCAGCGCCTGTTTTTCGATCTGAGTACTCTGTACCAGAGCTACGTGTACT
ACTACTATCCCCAGTTGTTCGAGGATGTGAAGAAGCCAGCTGATCCCGAT
AACCTCAAGAAGATCGATGATGCTTTCGCTATGTTCAATACTCTGTTGAA
GGGTCAGCAGTACGCCGCCCTCAACAAGTTGACTCTGGCCGATTTTGCGC
TTCTGGCCACCGTTTCCACTTTTGAAATATCGGAATATGATTTTGGTAAA
TATCCGGAAGTGGTTAGGTGGTACGACAATGCCAAGAAAGTGATACCCGG
CTGGGAGGAGAACTGGGAGGGCTGCGAGTACTACAAGAAATTGTATCTGG
GTGCGATTTTGAACAAACAAGCAAGCTTTCTAGACCAT

BO34117.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
GstD9-RB 657 CG10091-PB 1..654 17..670 3270 100 Plus
GstD9-RA 657 CG10091-PA 1..654 17..670 3270 100 Plus
GstD1-RB 630 CG10045-PB 7..355 23..371 425 74.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
GstD9-RB 786 CG10091-RB 51..705 16..670 3275 100 Plus
GstD9-RA 775 CG10091-RA 40..694 16..670 3275 100 Plus
GstD1-RB 843 CG10045-RB 95..443 23..371 425 74.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12366244..12366898 670..16 3275 100 Minus
3R 32079331 3R 12368217..12368565 371..23 425 74.8 Minus
3R 32079331 3R 12372115..12372340 137..362 350 77 Plus
3R 32079331 3R 12374270..12374452 137..319 300 77.6 Plus
3R 32079331 3R 12373214..12373371 152..309 265 77.8 Plus
3R 32079331 3R 12365221..12365423 341..139 220 73.9 Minus
3R 32079331 3R 12372538..12372594 566..622 195 89.5 Plus
Blast to na_te.dros performed on 2014-11-28 13:36:18 has no hits.

BO34117.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:50:57 Download gff for BO34117.complete
Subject Subject Range Query Range Percent Splice Strand
GstD9-RA 46..694 22..672 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:45 Download gff for BO34117.complete
Subject Subject Range Query Range Percent Splice Strand
GstD9-RA 46..694 22..672 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:49 Download gff for BO34117.complete
Subject Subject Range Query Range Percent Splice Strand
GstD9-RA 46..694 22..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:49 Download gff for BO34117.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12366240..12366892 22..672 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:45 Download gff for BO34117.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8191962..8192614 22..672 99   Minus

BO34117.pep Sequence

Translation from 16 to 688

> BO34117.pep
MLDFYYMLYSAPCRSILMTARALGLELNKKQVDLDAGEHLKPEFVKINPQ
HTIPTLVDDGFAIWESRAILIYLAEKYDKDGSLYPKDPQQRAVINQRLFF
DLSTLYQSYVYYYYPQLFEDVKKPADPDNLKKIDDAFAMFNTLLKGQQYA
ALNKLTLADFALLATVSTFEISEYDFGKYPEVVRWYDNAKKVIPGWEENW
EGCEYYKKLYLGAILNKQASFLDH

BO34117.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
GstD9-PB 218 CG10091-PB 1..218 1..218 1160 100 Plus
GstD9-PA 218 CG10091-PA 1..218 1..218 1160 100 Plus
GstD1-PB 209 CG10045-PB 1..208 1..210 761 65.7 Plus
GstD1-PA 209 CG10045-PA 1..208 1..210 761 65.7 Plus
GstD8-PA 212 CG4421-PA 1..206 2..209 698 61.1 Plus