Clone BO34118 Report

Search the DGRC for BO34118

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:341
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG17717-RA
Protein status:BO34118.pep: Imported from assembly
Sequenced Size:832

Clone Sequence Records

BO34118.complete Sequence

832 bp assembled on 2013-05-14

GenBank Submission: KX793821

> BO34118.complete
GAAGTTATCAGTCGACATGTCGCATCATCAACACGTTCTTTCCGAGGCCG
CTGCCCTTCGTCTGATTAACGGTCTGGAGTCAGCCGGCAATGCCACAATG
CCACTCGGCGCTCAGCCGCCTCAGTCAGCGGCAGCTGAAGCAATCTGCTC
GTCGCAAATCGTAGCATCGGCACATGGCACGCCCACTGCATCCACGGCAG
CACTGGAAATATCCTCAGCACGACAACGGATGCTGCGAAGTCACCTACAG
GAGAGCCTCCATTCGGCGAACGAAAGCGGCAACTCGTGCCGCATCTGCCG
CTGGAACCGCAACGACATGGAGATCATCAAATGTCCCTGCAACTGCAAGG
GCAGCGTGGGCTACATCCACCTAAAGTGCTTGAAGCGCTGGATCATGCAC
AGGCGGGATAATCGCTGTGAGATCTGCAATGCGGTCTTTAATATCGCGGA
GGAGCGGGCCAGTCTGAAGCAAATGATCCGAACCTTCTGCTGCGGCCGTT
GTTGCGGCCTGATTGTGAAGCATCTGCTATTTAGCGCCTCGCTAATGCCA
CTAGCCCATATCATCTTGCAGCAGGTGCTGCAGTGCATGGATAATATGAA
TCAAGGCAGCACCGATCAGTTAACCGTCCAGGAGGTGTTTGTCGCCTCTT
GTGCCCTTCTGACCTCCAGTGCACTTTTCTTCCACTTCTTTGAGTTTGTC
ACCACACGATTTATGCTCATCCGGAACATTCTCAGCCACTGGTGGATGTT
TGGCAGCACCTCCGATTTTGAGCTGGTGGAGATTGAGGATGATTCCATCG
ATTTTTTCGATGATGCAAGCTTTCTAGACCAT

BO34118.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-RA 801 CG17717-PA 1..798 17..814 3960 99.7 Plus
CG17717-RB 783 CG17717-PB 1..780 17..814 3655 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-RA 1092 CG17717-RA 202..999 17..814 3960 99.7 Plus
CG17717-RB 1074 CG17717-RB 202..981 17..814 3655 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6589491..6589833 17..359 1685 99.4 Plus
X 23542271 X 6590311..6590553 572..814 1215 100 Plus
X 23542271 X 6590032..6590251 358..577 1100 100 Plus
Blast to na_te.dros performed 2014-11-28 13:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 423..505 509..431 108 62.7 Minus

BO34118.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:50:58 Download gff for BO34118.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RA 202..999 17..816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:48 Download gff for BO34118.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RA 202..999 17..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:51 Download gff for BO34118.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RA 202..999 17..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:51 Download gff for BO34118.complete
Subject Subject Range Query Range Percent Splice Strand
X 6589491..6589832 17..358 99 -> Plus
X 6590033..6590248 359..574 100 -> Plus
X 6590314..6590553 575..816 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:48 Download gff for BO34118.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6483524..6483865 17..358 99 -> Plus
arm_X 6484066..6484281 359..574 100 -> Plus
arm_X 6484347..6484586 575..816 99   Plus

BO34118.pep Sequence

Translation from 16 to 832

> BO34118.pep
MSHHQHVLSEAAALRLINGLESAGNATMPLGAQPPQSAAAEAICSSQIVA
SAHGTPTASTAALEISSARQRMLRSHLQESLHSANESGNSCRICRWNRND
MEIIKCPCNCKGSVGYIHLKCLKRWIMHRRDNRCEICNAVFNIAEERASL
KQMIRTFCCGRCCGLIVKHLLFSASLMPLAHIILQQVLQCMDNMNQGSTD
QLTVQEVFVASCALLTSSALFFHFFEFVTTRFMLIRNILSHWWMFGSTSD
FELVEIEDDSIDFFDDASFLDH

BO34118.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-PA 266 CG17717-PA 1..266 1..266 1404 100 Plus
CG17717-PB 260 CG17717-PB 1..260 1..266 1353 97.7 Plus