BO34120.complete Sequence
2314 bp assembled on 2013-10-14
GenBank Submission: KX797669
> BO34120.complete
GAAGTTATCAGTCGACATGTATATATTAATATATATATCCATTCCGAAAC
ATCCACAAACAGACAAGACCAGACCGATATACCCTAGCACATTGGGAACG
GAGCTTCGAACTGAGCTCGGTAAACAAAAAATCTACTGTGCGAAATGCAC
GAAGAAGTGCTCCGGCGAGGTGCTCCGCGTGGCGGACAACCACTTCCACA
AGGCCTGCTTCCAGTGCTGCCAGTGCAAGAAGTCCCTGGCCACCGGCGGA
TTCTTCACAAAGGACAACGCCTACTATTGCATACCGGACTATCAGCGGCT
GTACGGCACCAAGTGCGCAAATTGCCAGCAGTATGTGGAGGGCGAGGTGG
TCAGCACCATGGGCAAGACCTATCACCAGAAGTGCTTCACCTGCTCCAAG
TGCAAGCAGCCCTTCAAGTCGGGCAGTAAGGTGACCAACACCGGAAAGGA
GGTGCTTTGCGAGCAATGCGTCACGGGTGCTCCAGTGTCGCCCAGTCGCC
AGGCGACGGGTGGAGGCGTCTCCTCGCCAGCTCCTCCGGCGGAGAGTCCG
ACGAGAGCCACTGCCCACCAGCAGCACGGCAGTGTGATCTCTCATAAGGC
GCACCTCAAGGAGGACTACGATCCCAATGACTGTGCCGGCTGTGGGGAGC
TGCTGAAGGAGGGCCAGGCACTGGTGGCGTTGGACCGGCAGTGGCATGTC
TCTTGTTTCCGGTGCAAGGCCTGCCAGGCGGTGCTCAATGGGGAGTACAT
GGGCAAAGACGCGGTGCCCTACTGCGAGAAGTGCTACCAGAAGGGATTCG
GGGTGAAGTGTGCCTACTGCAGTCGCTTCATTAGCGGCAAGGTGCTCCAG
GCGGGCGACAACCACCACTTCCATCCGACCTGTGCCCGCTGCACAAAGTG
CGGCGATCCCTTCGGCGACGGCGAGGAGATGTACCTGCAGGGCAGTGCCA
TCTGGCATCCGCGATGCGGTCCGGGTCCCTCCGAGTCCGGCATAATTTTG
AACGGCGGCGGAGGCACTTCGTCGGTGGTCGGAGGTGCCTCCAATGGCAA
CTTCACAGACACTGAATGCGACCGGATGAGCTCCAGTGCCCTTAGCGAGA
TGCACTACCGAACGGTGAGTCCGGGTCTGATACTCCGGGAGTACGGACGA
CCCAATGCCGAGGACATCTCGCGCATCTACACCTACAGCTATCTGACGGA
TGCGCCGCACTATCTGCGCAAGCCGATCGATCCGTATGACAAGACGCCGC
TGTCGCCGCACTTCCATCGGCCCTCCTCATACGCGACCACCGCCAGCAAT
GCGGGATCCGTGGCCGGAAGCCGCCCGCCGTCGCGTCCCCACTCGCGGAC
CCGCAGCGCCATGAAGGTGCTGGTGGACGCCATCCGCTCGGAGACGCCGC
GTCCCAAGAGTCCTGGCATGAACAACGAGGAGCCGATTGAACTGTCTCAC
TATCCGGCCGCCAAGAAGCCGCCGCCAGGTGAGCAGCCCAAGATCGAGCG
GGATGACTTTCCCGCTCCGCCGTATCCCTACACGGATCCGGAGCGTAGGC
GGCGATACAGTGATACCTACAAGGGAGTGCCCGCCTCCGATGATGAGGAC
GAGAATGTGGAGAATGGCAAGCCGAATGGCAAGGTCAAGAATGGCGAGGA
GCAGCAACGCCTTCAACGCGAAGCCGAACAGCTGGAAAAGCTTAACTCGG
GCATCGGATCGGCGATTGCCAAGGACCTCAAGGAGCACGCCAAGTACAGG
AAGTGGAAGCAGAACAATTTGGATCCGCGCAACGCATCCAGGACGCCCTC
CGCTTCCAAGGAGCCACTCTACAAATTGAGATACGAATCGCCCATTGGAG
CATCGCCATCGCGCAATCTGGACCACCAGAAGCCCTTCTACGAGGACGAG
ATGTTCGATCGCTCCACCAGCTACCGTGGCTCGCTTGGCAAATCGCTTGG
AAACGCGCCCAGCTACAATGCCATACATTCCTACCGATCGCCGCCCAAGC
CCGGATACGGATTCAAAACGACGACTCTGCCCTATATACGCAATGGCTTC
AGCTCCGACTTCTCCTATGGAGGACTGGGCGACAAGACCCACAGCACAGA
TTTGAGCTGCGGCAAATCGGAGGCTTCTGTGGACTCGATCACCGAGGGCG
ATAGGCGAGCTCTGATGGGCGGCGACCTGCCCGCCTCGAGCACTTACTCA
GGAGCACTCTCCTACCACTATCCGCAGGCCGGACTCATCCGGCGCAGTCT
GCCCAACATGTCGCATTCGATAATTAGTTGCGCTAACGCAAAATTGGCAA
GCTTTCTAGACCAT
BO34120.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:06:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unc-115b-RD | 2283 | CG31332-PD | 1..2280 | 17..2296 | 11385 | 100 | Plus |
| Unc-115a-RF | 2478 | CG31352-PF | 1..2270 | 17..2271 | 11075 | 99.3 | Plus |
| Unc-115b-RB | 2250 | CG31332-PB | 70..2247 | 119..2296 | 10875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unc-115b-RD | 2784 | CG31332-RD | 100..2379 | 17..2296 | 11385 | 100 | Plus |
| Unc-115a-RF | 3494 | CG31352-RF | 293..2562 | 17..2271 | 11075 | 99.3 | Plus |
| Unc-115b-RB | 2606 | CG31332-RB | 366..2543 | 119..2296 | 10875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9690432..9691105 | 1102..429 | 3370 | 100 | Minus |
| 3R | 32079331 | 3R | 9698318..9698991 | 1102..429 | 3370 | 100 | Minus |
| 3R | 32079331 | 3R | 9689322..9689876 | 1656..1102 | 2775 | 100 | Minus |
| 3R | 32079331 | 3R | 9697208..9697762 | 1656..1102 | 2775 | 100 | Minus |
| 3R | 32079331 | 3R | 9691161..9691476 | 434..119 | 1580 | 100 | Minus |
| 3R | 32079331 | 3R | 9699047..9699362 | 434..119 | 1580 | 100 | Minus |
| 3R | 32079331 | 3R | 9689080..9689253 | 1830..1657 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 9696966..9697139 | 1830..1657 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 9687465..9687638 | 2296..2123 | 855 | 99.4 | Minus |
| 3R | 32079331 | 3R | 9695376..9695524 | 2271..2123 | 730 | 99.3 | Minus |
| 3R | 32079331 | 3R | 9688714..9688855 | 1970..1829 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 9696600..9696741 | 1970..1829 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 9691635..9691742 | 124..17 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 9699521..9699628 | 124..17 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 9688535..9688622 | 2057..1970 | 440 | 100 | Minus |
| 3R | 32079331 | 3R | 9696421..9696508 | 2057..1970 | 440 | 100 | Minus |
| 3R | 32079331 | 3R | 9687701..9687767 | 2123..2057 | 335 | 100 | Minus |
| 3R | 32079331 | 3R | 9695587..9695653 | 2123..2057 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:06:49 has no hits.
BO34120.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 10:36:26 Download gff for
BO34120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-115b-RD | 100..2379 | 17..2298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:41:32 Download gff for
BO34120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-115b-RD | 100..2379 | 17..2298 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:32 Download gff for
BO34120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9689080..9689253 | 1657..1830 | 100 | <- | Minus |
| 3R | 9687463..9687637 | 2124..2298 | 98 | <- | Minus |
| 3R | 9687701..9687767 | 2057..2123 | 100 | <- | Minus |
| 3R | 9688536..9688621 | 1971..2056 | 100 | <- | Minus |
| 3R | 9688714..9688853 | 1831..1970 | 100 | <- | Minus |
| 3R | 9689322..9689875 | 1103..1656 | 100 | <- | Minus |
| 3R | 9690432..9691103 | 431..1102 | 100 | <- | Minus |
| 3R | 9691165..9691475 | 120..430 | 100 | <- | Minus |
| 3R | 9691640..9691742 | 17..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 10:36:26 Download gff for
BO34120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5513185..5513359 | 2124..2298 | 98 | <- | Minus |
| arm_3R | 5513423..5513489 | 2057..2123 | 100 | <- | Minus |
| arm_3R | 5514258..5514343 | 1971..2056 | 100 | <- | Minus |
| arm_3R | 5514436..5514575 | 1831..1970 | 100 | <- | Minus |
| arm_3R | 5514802..5514975 | 1657..1830 | 100 | <- | Minus |
| arm_3R | 5515044..5515597 | 1103..1656 | 100 | <- | Minus |
| arm_3R | 5516154..5516825 | 431..1102 | 100 | <- | Minus |
| arm_3R | 5516887..5517197 | 120..430 | 100 | <- | Minus |
| arm_3R | 5517362..5517464 | 17..119 | 100 | | Minus |
BO34120.pep Sequence
Translation from 16 to 2314
> BO34120.pep
MYILIYISIPKHPQTDKTRPIYPSTLGTELRTELGKQKIYCAKCTKKCSG
EVLRVADNHFHKACFQCCQCKKSLATGGFFTKDNAYYCIPDYQRLYGTKC
ANCQQYVEGEVVSTMGKTYHQKCFTCSKCKQPFKSGSKVTNTGKEVLCEQ
CVTGAPVSPSRQATGGGVSSPAPPAESPTRATAHQQHGSVISHKAHLKED
YDPNDCAGCGELLKEGQALVALDRQWHVSCFRCKACQAVLNGEYMGKDAV
PYCEKCYQKGFGVKCAYCSRFISGKVLQAGDNHHFHPTCARCTKCGDPFG
DGEEMYLQGSAIWHPRCGPGPSESGIILNGGGGTSSVVGGASNGNFTDTE
CDRMSSSALSEMHYRTVSPGLILREYGRPNAEDISRIYTYSYLTDAPHYL
RKPIDPYDKTPLSPHFHRPSSYATTASNAGSVAGSRPPSRPHSRTRSAMK
VLVDAIRSETPRPKSPGMNNEEPIELSHYPAAKKPPPGEQPKIERDDFPA
PPYPYTDPERRRRYSDTYKGVPASDDEDENVENGKPNGKVKNGEEQQRLQ
REAEQLEKLNSGIGSAIAKDLKEHAKYRKWKQNNLDPRNASRTPSASKEP
LYKLRYESPIGASPSRNLDHQKPFYEDEMFDRSTSYRGSLGKSLGNAPSY
NAIHSYRSPPKPGYGFKTTTLPYIRNGFSSDFSYGGLGDKTHSTDLSCGK
SEASVDSITEGDRRALMGGDLPASSTYSGALSYHYPQAGLIRRSLPNMSH
SIISCANAKLASFLDH
BO34120.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unc-115b-PD | 760 | CG31332-PD | 1..760 | 1..760 | 4143 | 100 | Plus |
| Unc-115b-PC | 784 | CG31332-PC | 1..784 | 1..760 | 4097 | 96.9 | Plus |
| Unc-115a-PF | 825 | CG31352-PF | 1..765 | 1..760 | 4089 | 98.4 | Plus |
| Unc-115a-PC | 839 | CG31352-PC | 1..779 | 1..760 | 4075 | 96.7 | Plus |
| Unc-115a-PB | 844 | CG31352-PB | 1..784 | 1..760 | 4059 | 96 | Plus |
