BO34123.complete Sequence
1708 bp assembled on 2013-09-16
GenBank Submission: KX798695
> BO34123.complete
GAAGTTATCAGTCGACATGGAAAGTACAATAAGGTGGGGCCTTGCGTTCA
CCATTAAGGAACGGCAACGTTTGGGCATCATGGGATTGATGCCCTGCTCC
GTGCGCTCCATGGATGACCAGATGAATGCGGCCCTGGCGAATTTTGAGGC
GAGACCCACAGATATCGCCCGCTTTACATACTTGAGTGCTGTCCACCATC
GACACCGGCGACTGTACTACCGGTTCATCAAGGAGAACATCGAGAAATCG
CTACCCATTGTTTATACACCAACGGTGGGCGATGTGGTGGCCACCTATGG
ACTGAACTTCCAGCAGGCCATCAGCCTGTTCATCAGCATTCACGACAAGG
GCCACATCCGGGATCTTATGCACAACTGGGTGGACGAGGGCGTTAAGGCC
ATCTGTGTGACGGATGGCGGAAGGGTACTGGGTCTCGGGGACATGGGTGC
CAATGCGATGGGCATTAGTTTGGGCAAAATGATCCTATATACGGCTTTGG
GTAGCATTCCGCCGAGCACACTAATGCCCGTTTGCCTCGACGTGGGTACC
GATAATCAGGCCCTGCTGCAGGATCCCCTTTATGTTGGGGCACGAATACC
GCGGGTCAAGGGACCGGAATACGATGAACTGGTGGATGAATTTATGGAGT
CGGCGGTTAAATGCTTCGGAAACAACACCTTCATCCACTTCGAGGACTTT
GCCACTCCAAATGCCTTGAAGTTCTTGGAAAAATACCAGTACAAGTACTG
TTGCTTCAACGATGATATTCAGGGAACGGGAGCCACTGGCCTGGCCGCGT
TCATCAATGTGGAACGCATCACTGGCCGTAAATTGGAGGACACCGTATTT
CTCTTCGTAGGAGCTGGGAGTGCGGCATTGGGTATCGCCAATATGCTGGC
CATGGAACTGGAGGTACGCGGCATTCCTGCCGAGGAGGCAACTAAAAATA
TCTACTTGATGGATGTCAATGGTATTTTGACACCGGAGTCACCTAATCCA
CCGGAGATGGGTAAAATATTTATAAAGTCCATGGAGCCCATGAAGGATAT
GATGGCCGTGCTGAAGAAGCTTAAGCCATCCGTACTTGTTGGAGCAACTG
GTGTGGGTGGAATTTTCAATGAAGAAGTACTGAAAACCATGGCGAAAAAT
CACGAACGTCCTGCAGTTTTTCCCCTCTCGAATCCAACTGCCAACTCGGA
ATGCACCGCCGAGCAGGCTTTTACACACACTGAGGGTCGCGTGCTCTTCG
GATCCGGATCGCCCTTTCCACCAGTGGTCATCAATGGCAAAAGATATCGC
CCCGCTCAGGCCAACAACTGTCTGACTTTTCCGGGCATCGCATTGGCCGC
CATTACGGCCAAGGCCCGGTATCTGCCAAACGAAGTATTTTCCGTTGTGT
CGCACGAGCTGGCCAGGAATACACCGCAGGAACTACTTGACGAAGGCACT
CTGTTTCCGCCCATCAAGGATGCACATAATGTGGCCTTCAATGTGGGCGT
TGCCATGACTCAGTATCTAATTGATAATGATCTTTCAAATGTTTACCCAA
AGCCCGATGATATCTGTGAGTTTGTCAAGAGAAGTCTGTATAAGTTCGAT
TACAGAAATTCCCTGCCAACTACGTGGGACTATCCCGTGGAACCGCCAAC
ACCGAAACCCAAAACCAAACCCAAAACGAAGCCGAAGGAAGCAAGCTTTC
TAGACCAT
BO34123.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Menl-2-RD | 1677 | CG7969-PD | 1..1674 | 17..1690 | 8370 | 100 | Plus |
| Menl-2-RE | 1803 | CG7969-PE | 131..1800 | 17..1690 | 8275 | 99.8 | Plus |
| Menl-2-RA | 1803 | CG7969-PA | 131..1800 | 17..1690 | 8275 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:45:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Menl-2-RD | 2127 | CG7969-RD | 185..1858 | 17..1690 | 8370 | 100 | Plus |
| Menl-1-RD | 4198 | CG7964-RD | 2260..3929 | 17..1690 | 8275 | 99.8 | Plus |
| Menl-2-RE | 4198 | CG7969-RE | 2260..3929 | 17..1690 | 8275 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16415689..16416887 | 1235..37 | 5995 | 100 | Minus |
| 2R | 25286936 | 2R | 16415328..16415624 | 1529..1233 | 1485 | 100 | Minus |
| 2R | 25286936 | 2R | 16415084..16415245 | 1690..1529 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:45:50 has no hits.
BO34123.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:48:39 Download gff for
BO34123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Menl-2-RD | 185..1858 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:35 Download gff for
BO34123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Menl-2-RD | 185..1858 | 17..1692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:35 Download gff for
BO34123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16415082..16415244 | 1530..1692 | 98 | <- | Minus |
| 2R | 16415328..16415622 | 1235..1529 | 100 | <- | Minus |
| 2R | 16415690..16416886 | 38..1234 | 100 | <- | Minus |
| 2R | 16416946..16416966 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:48:39 Download gff for
BO34123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12302587..12302749 | 1530..1692 | 98 | <- | Minus |
| arm_2R | 12302833..12303127 | 1235..1529 | 100 | <- | Minus |
| arm_2R | 12303195..12304391 | 38..1234 | 100 | <- | Minus |
| arm_2R | 12304451..12304471 | 17..37 | 100 | | Minus |
BO34123.pep Sequence
Translation from 16 to 1708
> BO34123.pep
MESTIRWGLAFTIKERQRLGIMGLMPCSVRSMDDQMNAALANFEARPTDI
ARFTYLSAVHHRHRRLYYRFIKENIEKSLPIVYTPTVGDVVATYGLNFQQ
AISLFISIHDKGHIRDLMHNWVDEGVKAICVTDGGRVLGLGDMGANAMGI
SLGKMILYTALGSIPPSTLMPVCLDVGTDNQALLQDPLYVGARIPRVKGP
EYDELVDEFMESAVKCFGNNTFIHFEDFATPNALKFLEKYQYKYCCFNDD
IQGTGATGLAAFINVERITGRKLEDTVFLFVGAGSAALGIANMLAMELEV
RGIPAEEATKNIYLMDVNGILTPESPNPPEMGKIFIKSMEPMKDMMAVLK
KLKPSVLVGATGVGGIFNEEVLKTMAKNHERPAVFPLSNPTANSECTAEQ
AFTHTEGRVLFGSGSPFPPVVINGKRYRPAQANNCLTFPGIALAAITAKA
RYLPNEVFSVVSHELARNTPQELLDEGTLFPPIKDAHNVAFNVGVAMTQY
LIDNDLSNVYPKPDDICEFVKRSLYKFDYRNSLPTTWDYPVEPPTPKPKT
KPKTKPKEASFLDH
BO34123.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Menl-2-PD | 558 | CG7969-PD | 1..558 | 1..558 | 2931 | 100 | Plus |
| Menl-2-PE | 600 | CG7969-PE | 50..600 | 8..558 | 2892 | 100 | Plus |
| Menl-2-PA | 600 | CG7969-PA | 50..600 | 8..558 | 2892 | 100 | Plus |
| Menl-1-PD | 610 | CG7964-PD | 59..597 | 9..546 | 1451 | 49 | Plus |
| Men-b-PA | 617 | CG5889-PA | 65..602 | 8..543 | 1336 | 45.8 | Plus |
