BO34131.complete Sequence
3172 bp assembled on 2013-10-14
GenBank Submission: KX793943
> BO34131.complete
GAAGTTATCAGTCGACATGAGCATGCAAGTTTGTTCTTTGCCAGACGACA
TCCTTATATTTAGCCTAACCCCACGGGATGGCGAGTCCGAGGACGACGAG
GGCAATAGCAAAGGAAACGATCGCAGCGAGTGCTTCTTTGCCGGCAAGGG
AACCGCCCTGGTACTGGCTCTTAAGGATATCCCGCCCCTGACGCAAAGCG
AGCGTCGCCTGAGCACCGACTCCACCCGCTCCAGTAACAGTACGCAAAGC
AACAACTCGGACATCCAGCTCCACCTGCAATCAATGTTTTACCTGTTGCA
GCGCGAGGACACGCTAAAGATGGCTGTCAAGTTGGAGTCACAGCGGTCCA
ACCGCACGCGCTATCTGGTGATTGCATCGCGTAGTTGTTGTCGGAGCGGC
ACCAGCGACCGTCGGCGCCACCGGATCATGCGTCACCACTCGGTAAAAGT
TGGTGGATCCGCGGGAACAAAGTCGTCCACCTCCCCGGCGGTCCCCACGC
AGCGTCAGCTGTCCGTTGAGCAGACCGCCACAGAGGCCAGCAGCAAATGT
GATAAAACAGCAGACAAGGAAAACGCAACGGCGGCCGGCGACAACAAGAA
TACCTCGGGCATGGAGGAGTCCTGCCTGCTGGGCATAGACTGCAACGAGC
GGACCACCATTGGCCTGGTGGTGCCCATCCTGGCGGACACCACAATTCAC
CTGGATGGCGATGGCGGATTCAGCGTCAAAGTGTACGAAAAAACGCATAT
ATTTAAGCCGGTCTCAGTGCAGGCCATGTGGTCCGCGCTGCAGACGCTGC
ACAAAGTGTCGAAAAAGGCTCGTGAGAACAACTTCTATGCCAGTGGACCC
TCCCACGACTGGCTATCCAGCTACGAGAGGCGCATCGAGTCGGACCAGTC
TTGTCTGAACGAGTGGAATGCCATGGACGCGCTCGAGAGCCGCCGACCAC
CTTCGCCTGATGCCATACGAAACAAACCCCCCGAAAAGGAGGAAACCGAA
AGTGTCATTAAGATGAAGCTGAAGGCCATCATGATGTCAGTGGACCTGGA
CGAGGTCACCTCCAAGTATATACGCGGACGCCTCGAGGAGATCCTGGACA
TGGATTTGGGCGAGTACAAGTCGTTTATCGACGCCGAAATGCTCGTTATT
CTAGGCCAAATGGATGCCCCCACCAAGATTTTCGAGCACGTCTATCTGGG
ATCAGAGTGGAATGCCAGCAACTTGGAGGAGCTGCAGAAAAACGGCGTTC
GCCACATCCTGAACGTGACGCGGGAGATCGATAACTTCTTTCCGGGCACC
TTCGAGTATTTCAACGTTCGCGTGTACGACGATGAGAAGACGAACCTGCT
CAAGTACTGGGACGATACGTTCCGCTACATCACGCGGGCGAAAGCCGAGG
GATCCAAGGTGCTGGTGCACTGCAAGATGGGCGTCAGCCGATCCGCCTCG
GTTGTCATCGCATATGCCATGAAGGCTTACCAGTGGGAGTTCCAGCAGGC
GCTAGAGCACGTGAAGAAGAGGCGCAGCTGTATAAAGCCCAACAAGAACT
TCCTCAATCAGCTGGAGACGTATAGTGGGATGTTGGACGCCATGAAGAAC
AAGGAGAAGCTGCAGCGCAGCAAGAGCGAGACGAACTTGAAGAGCACAAA
GGACGCGCGACTGTTGCCTGGTAGCGAACCAACGCCCCTCATTCAGGCTC
TAAACCAGGCCAAGTCGAAGTCGACTGGTGAAGCGGGCGTAACACCCGAT
GGCGAAGAGGAGGATGGTTCACGCATGCACCGGCGATCCATCGCCCAGAA
GTCACAGCGTCGCATGGTTAGGCGCTCGAGCAGCACATCACCCAAAACCC
AGACGGCTGTGGTTACCAAGCAGCAAAGCCAGTCTATGGAGAACCTTACG
CCGGAACGTAGCGTGGCCGAGGAGCCAAAAAATATGCGCTTCCCAGGCAG
CAACGGCGAGAACTACAGCGTCACCCAGAACCAGGTGCTGCACATCCAGA
AACACACGCCTCTGTCAGTGCGCACACGAATTCACGATCTCGAGGCGCAC
CGGGCGGACCAGCTGCCACAGCAACCTGTCTGGACCTCGCTGACAAAACT
GATTACACAGACCTCTCACTTGGGAAAAAGTGTCAGTGGCAGCAGTAGTG
GAAATATTGACTCGCGGCGGGATTCTAGCTGTTCGGATGTATTCTCCTCG
CAGGTGGACAGTGTTTTTGCCAAGGATGAAGGGGAGAAGCGCCAGCGTCG
AAAGACGCACTCCTGGACAGAGTCCTTGGGTCCAAGTGGCGGCATCGTCC
TGGACCCCACGCCACAGCAACAGAAGCAGCAGTCAAACGCCATTCTGCGT
CCCCGAGGCACACGTCAGCGGGAGCTGCCTTCGCGGCACGCAAGTTGGGG
ATCAGGAGACAACCGATGCTGTCTGCCGCAGAGGACCAGTTCCGGCTCCT
ACTATGACTCCAATCGCAACACTACGGCCATCTTCGAGGGCGTTATCCAA
GACCTCAAGCGCAGTTCCAATTGCAATGTAATCGAAGGAGTCGCCGTTGC
TGTGGAACCGATAGTTGGAGTTGGCGAGGGCACCGTAAAGCGCACCAAGC
AGAAGCTGGAAGAGAGCACCTCGCTGAAAAAGCGCTGCCAGGAAGAAAGC
CAGGAGCTGCTACTCGAGGCTGTGGATGCTGGGCAGAGGCGGTGCCCAAG
CCTCTATAGGAGCGCCTCCTCGGCGCACAGTCCGCGGCAGCGTCAGCCAC
TACGCTGTAATAGTGAGGAGCTGATGCACACCAGCGACATCGAGAACAAG
AATACCACGCCAGGCGACCATGAGGCGACGGTAGTGCTGCGCGTCCAGGG
ACAAACGCTGGCCGACGATCAGCGCATCTCGGGCAATGTGCAAATACTCA
AGCAAAATTTCGAAGCCAAAGCGGGAGTGGTGGGCACAGGAGGAGGAGGA
GGCGGTGGCACTGCAGCGGGATCGGGCAGTAGTTCAACAATCGCAACGTC
GGTATCGGCGGTGGCCGGAGCCTGCTCAGCGAATCCCGGCAAGAAGACGA
CTAGCCACCAATCACTGCCATCGTCGCCGGTGGCGCAGCATGCCAACCAC
GTGTCCGCCGCCTCCAACTCCAACTCCTCCGCCTCCAACTCGTCCGATTC
CAGCGCAAGCTTTCTAGACCAT
BO34131.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssh-RB | 3582 | CG6238-PB | 1..3144 | 17..3160 | 15690 | 99.9 | Plus |
ssh-RC | 3141 | CG6238-PC | 1..3138 | 17..3154 | 15675 | 100 | Plus |
ssh-RA | 3579 | CG6238-PA | 57..3141 | 76..3160 | 15395 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssh-RB | 4254 | CG6238-RB | 247..3390 | 17..3160 | 15690 | 99.9 | Plus |
ssh-RC | 4186 | CG6238-RC | 247..3384 | 17..3154 | 15675 | 100 | Plus |
ssh-RA | 4780 | CG6238-RA | 539..3623 | 76..3160 | 15395 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24939867..24941782 | 3160..1245 | 9550 | 99.9 | Minus |
3R | 32079331 | 3R | 24942819..24943211 | 714..322 | 1965 | 100 | Minus |
3R | 32079331 | 3R | 24941867..24942142 | 1245..970 | 1365 | 99.6 | Minus |
3R | 32079331 | 3R | 24943275..24943522 | 323..76 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 24942203..24942398 | 975..780 | 980 | 100 | Minus |
3R | 32079331 | 3R | 24942459..24942527 | 782..714 | 345 | 100 | Minus |
3R | 32079331 | 3R | 24943589..24943649 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:06:34 has no hits.
BO34131.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 10:15:10 Download gff for
BO34131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssh-RB | 247..3385 | 17..3156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:41:28 Download gff for
BO34131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssh-RB | 247..3385 | 17..3156 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:28 Download gff for
BO34131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24939871..24941781 | 1246..3156 | 99 | <- | Minus |
3R | 24941867..24942136 | 976..1245 | 100 | <- | Minus |
3R | 24942203..24942397 | 781..975 | 100 | <- | Minus |
3R | 24942461..24942526 | 715..780 | 100 | <- | Minus |
3R | 24942819..24943210 | 323..714 | 100 | <- | Minus |
3R | 24943276..24943521 | 77..322 | 100 | <- | Minus |
3R | 24943590..24943649 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 10:15:10 Download gff for
BO34131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20768541..20768932 | 323..714 | 100 | <- | Minus |
arm_3R | 20765593..20767503 | 1246..3156 | 99 | <- | Minus |
arm_3R | 20767589..20767858 | 976..1245 | 100 | <- | Minus |
arm_3R | 20767925..20768119 | 781..975 | 100 | <- | Minus |
arm_3R | 20768183..20768248 | 715..780 | 100 | <- | Minus |
arm_3R | 20768998..20769243 | 77..322 | 100 | <- | Minus |
arm_3R | 20769312..20769371 | 17..76 | 100 | | Minus |
BO34131.pep Sequence
Translation from 16 to 3172
> BO34131.pep
MSMQVCSLPDDILIFSLTPRDGESEDDEGNSKGNDRSECFFAGKGTALVL
ALKDIPPLTQSERRLSTDSTRSSNSTQSNNSDIQLHLQSMFYLLQREDTL
KMAVKLESQRSNRTRYLVIASRSCCRSGTSDRRRHRIMRHHSVKVGGSAG
TKSSTSPAVPTQRQLSVEQTATEASSKCDKTADKENATAAGDNKNTSGME
ESCLLGIDCNERTTIGLVVPILADTTIHLDGDGGFSVKVYEKTHIFKPVS
VQAMWSALQTLHKVSKKARENNFYASGPSHDWLSSYERRIESDQSCLNEW
NAMDALESRRPPSPDAIRNKPPEKEETESVIKMKLKAIMMSVDLDEVTSK
YIRGRLEEILDMDLGEYKSFIDAEMLVILGQMDAPTKIFEHVYLGSEWNA
SNLEELQKNGVRHILNVTREIDNFFPGTFEYFNVRVYDDEKTNLLKYWDD
TFRYITRAKAEGSKVLVHCKMGVSRSASVVIAYAMKAYQWEFQQALEHVK
KRRSCIKPNKNFLNQLETYSGMLDAMKNKEKLQRSKSETNLKSTKDARLL
PGSEPTPLIQALNQAKSKSTGEAGVTPDGEEEDGSRMHRRSIAQKSQRRM
VRRSSSTSPKTQTAVVTKQQSQSMENLTPERSVAEEPKNMRFPGSNGENY
SVTQNQVLHIQKHTPLSVRTRIHDLEAHRADQLPQQPVWTSLTKLITQTS
HLGKSVSGSSSGNIDSRRDSSCSDVFSSQVDSVFAKDEGEKRQRRKTHSW
TESLGPSGGIVLDPTPQQQKQQSNAILRPRGTRQRELPSRHASWGSGDNR
CCLPQRTSSGSYYDSNRNTTAIFEGVIQDLKRSSNCNVIEGVAVAVEPIV
GVGEGTVKRTKQKLEESTSLKKRCQEESQELLLEAVDAGQRRCPSLYRSA
SSAHSPRQRQPLRCNSEELMHTSDIENKNTTPGDHEATVVLRVQGQTLAD
DQRISGNVQILKQNFEAKAGVVGTGGGGGGGTAAGSGSSSTIATSVSAVA
GACSANPGKKTTSHQSLPSSPVAQHANHVSAASNSNSSASNSSDSSASFL
DH
BO34131.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssh-PB | 1193 | CG6238-PB | 1..1048 | 1..1048 | 5370 | 99.9 | Plus |
ssh-PC | 1046 | CG6238-PC | 1..1046 | 1..1046 | 5366 | 100 | Plus |
ssh-PA | 1192 | CG6238-PA | 15..1047 | 16..1048 | 5269 | 99.5 | Plus |
ssh-PD | 1045 | CG6238-PD | 15..1045 | 16..1046 | 5265 | 99.6 | Plus |
Mkp3-PA | 241 | CG14080-PA | 43..186 | 383..523 | 202 | 31.2 | Plus |