BO34135.complete Sequence
2635 bp assembled on 2013-09-16
GenBank Submission: KX795782
> BO34135.complete
GAAGTTATCAGTCGACATGCCTTCCAAGAAATCGCCCAGGCCCACTTACT
GCGAGCCTAATCCGTACACGCGATTCTTTAATGCCCATAAATCTCTGCCC
CCGGATAAAAACGGTCAAAAGCAAGAAATCTACAATCGGGAAAGTGTTTA
TGTCCTGTCGAATAAGTCACGTGGCAAACGGCGATCGGGACGGGAAAATA
ACCAGCCAACTTGGCGACGACGCGGTGGCGGCGTTAACGAGGACCACATC
ATGGTCGTTACGCAGGATAACACGCAACAGCAGAGGGATAAGCCATTGCT
GACCGCCTCCCAATTGGATTCCATTTGCTATGACGTTATTAAAGAGCCAC
CGATGCAATTTCACGTGAATGGCACCGACATAGTGCCCAGTATTCGCGGC
CTCAGACTGAGTGTCTGCGTGGAGCACACGCGATTTCAGCTGGTGGCCAA
GGTTACCAGGAACATGGGATTTCAGCATGTGCCCGAGCATAGATTGTGGA
ACATCCAATGGTCGGACTCCACGCCCCATCATGACCTGCTGCGTAATATG
AAACGCTTTCAGCAGATTAACCATTTTCCAGGCATGGTGGAGATATGCCG
CAAGGATCTGCTGTCAAGAAATTTGAATCGCATGCTCAAAATGTTTCCCG
GCGATTATCGCATATTCCCCAAAACCTGGCTAATGCCAACCGATGCCTAC
GATGTAGCCATTTATGCGAACAAACACAAGCGCACTTTTATCCTAAAGCC
TTATTCGGCGGGTCAAGGACGTGGCATCTGGATAACCACCGATCTTCGCA
CTGTGGGCAAACGGGAGAAGCTCATCTGCCAAACTTACATAGAACGGCCC
CTACTTATAGATGGCTACAAGTTTGATCTGCGCGTCTACACACTTGTCAC
CTCGGTGGATCCACTACGCATTTTTGTGTACAATGAGGGTCTGGCACGCT
TTGCCACCCAGAAATATGTGCCACCAACAACGGGTAATAGCCACAATGTG
TTCATGCACCTGACCAACTATTGCCTGAATCGCCGGAACTCACAATACAT
GGTGGGCAATGGACCGGAAGCGGGTTCCAAACGCAAGCTAAGTGCCTTCA
ATAAGTGGCTAGTGGATCACAACTACGATGTGGGCGAGTTCTGGGCGAGT
GTGGATGATGCGATTATAAAGACGCTGATTAGTGCTTGGCCCACACTAAA
GCATAATTACAATGTATGCTTTCCAAAGCACGATAAGATACAGGCCAGCT
TTCAGTTGCTCGGATTCGATATCCTGGTGGACTGGAAACTGAAGCCCTAT
ATACTGGAAGTCAATCACACGCCTAGTTTGAGTGCAGATGAGTCGGTGGA
CATGGAAGTGAAGCGGCCATTAATTCGAGATACTCTCAACATGCTCAGCA
CCGCCTTGGTAGATAAAGAACAGATTATACGTGATGATCGAACAGAGCAC
AGGGCTAGATTACTAAGGAATATCTACAATAAGAAGGCTGCTGCCCAAAT
GCCGGGCTATTCGTCACCAATCCGAGAAGTTGGTGGCCACGATGTGCGGC
AAGCCTGCTCCATTGGAGCGTTAACCCAACAGATTGCCTGGGAGGAGAGC
CACCTTGGCAACTATAGGCGTATAATGCCGCCACGAGATTCCTCAAAGGT
CAACTACTATTGCAAGTTCTACGAGCAGAATAAGCAACCCATGTTCGCAG
ATACAGTTGCAAGTAGAAGACGTGAGCAGCTGAATCTCCAGGCAATACAA
AAGCACCAACGGGAGCGCCAGCAGGATCTGATTCAGCAACAGCAGATCCA
TACGCAGGCACAGAATCGCATGGGCAAGCACGTGCGTTGGCCAGGTGATC
TGGTGCAAGGTGAACAGGTAAATCCTGTCATCCTGCAGTCACGACGACGC
CGAGAGGAGGCCGAGGCTTATGCGAAAAAGCATCGAGCCTTGATAGCGCG
CGAAATTCAGCGCCAAAAAGAGCAACTCCTGGCGCCCACTTGCGCCAAGG
AGCGTTTGGGCATTTGGCAGAGTGTGCGCAGGGAAAAGCGCAGCCAATTT
TCACCCAAACGCGGCAGCAGCATCACCAAAGCTTATCGTCGCAAACAGCA
ACGAAATCTTAGCCTGCGGGCTCGTCAACAGCGGATGATCGAAATGGAAG
CCCAGCGTGATGCCAAATTCCTGGAGCAACACGCCCAAAAACAACGCCTC
GAAGGTGGCAGGAAAACGGGTCAAAGTGAATCGCCAAACTTACTGAGCAA
GATCACCGCGAAAAGCAAGACCAGCTTGAAAAAAAAGATGAAACCAAAGG
GAAAACCCGAGCTGAAAAAGGAAACCCTCCAGGAAGGCAACCACTGCCAG
ATGACAAAGTCTAAGGTGGAGCTAACACCTGGCAGCAAGGCTCGAGCATT
TGCAAATTGGACAGCCAGAACCATCAACGAAGCGGAAACTGACCAACTTC
TTAGCTGGCGAAAGGAAAGAGCCAATCAGTTAAATGAAACAAGGCTCAGG
GAATTGATATTCTCAAAAATGTACGAAAACGGTCACCTAACGAAGAACGA
TATCAAATGCTTCCCGGATCTACTTTATCAAATACTTAATAATGATTGCA
AGGAAGCGAGTTCTCGAGCAAGCTTTCTAGACCAT
BO34135.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16716-RC | 2604 | CG16716-PC | 1..2601 | 17..2617 | 12900 | 99.7 | Plus |
| CG5987-RA | 2163 | CG5987-PA | 577..1397 | 548..1368 | 340 | 69.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16716-RC | 2829 | CG16716-RC | 103..2703 | 17..2617 | 12900 | 99.7 | Plus |
| CG5987-RA | 2472 | CG5987-RA | 752..1572 | 548..1368 | 340 | 69.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19594854..19595749 | 847..1742 | 4465 | 99.9 | Plus |
| 2R | 25286936 | 2R | 19595802..19596568 | 1740..2506 | 3835 | 100 | Plus |
| 2R | 25286936 | 2R | 19593892..19594568 | 17..693 | 3310 | 99.3 | Plus |
| 2R | 25286936 | 2R | 19594644..19594797 | 694..847 | 755 | 99.4 | Plus |
| 2R | 25286936 | 2R | 19596629..19596740 | 2506..2617 | 560 | 100 | Plus |
| 3R | 32079331 | 3R | 27249258..27249508 | 1368..1118 | 295 | 74.5 | Minus |
| 3R | 32079331 | 3R | 27249606..27249779 | 1020..847 | 210 | 74.7 | Minus |
| 3R | 32079331 | 3R | 27250099..27250199 | 648..548 | 205 | 80.2 | Minus |
Blast to na_te.dros performed 2014-11-28 13:45:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..7027 | 1698..1997 | 142 | 53.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6833 | 1725..1835 | 131 | 59.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1125 | 1748..1812 | 118 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1604 | 1748..1815 | 117 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2276..2386 | 1683..1794 | 116 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6702..6794 | 1728..1817 | 115 | 61.3 | Plus |
BO34135.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:48:18 Download gff for
BO34135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16716-RC | 103..2703 | 17..2619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:16 Download gff for
BO34135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16716-RC | 103..2703 | 17..2619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:16 Download gff for
BO34135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19593892..19594568 | 17..693 | 99 | -> | Plus |
| 2R | 19594644..19594797 | 694..847 | 99 | -> | Plus |
| 2R | 19594855..19595748 | 848..1741 | 99 | -> | Plus |
| 2R | 19595804..19596568 | 1742..2506 | 100 | -> | Plus |
| 2R | 19596630..19596740 | 2507..2619 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:48:18 Download gff for
BO34135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15481397..15482073 | 17..693 | 99 | -> | Plus |
| arm_2R | 15482149..15482302 | 694..847 | 99 | -> | Plus |
| arm_2R | 15482360..15483253 | 848..1741 | 99 | -> | Plus |
| arm_2R | 15483309..15484073 | 1742..2506 | 100 | -> | Plus |
| arm_2R | 15484135..15484245 | 2507..2619 | 98 | | Plus |
BO34135.pep Sequence
Translation from 16 to 2635
> BO34135.pep
MPSKKSPRPTYCEPNPYTRFFNAHKSLPPDKNGQKQEIYNRESVYVLSNK
SRGKRRSGRENNQPTWRRRGGGVNEDHIMVVTQDNTQQQRDKPLLTASQL
DSICYDVIKEPPMQFHVNGTDIVPSIRGLRLSVCVEHTRFQLVAKVTRNM
GFQHVPEHRLWNIQWSDSTPHHDLLRNMKRFQQINHFPGMVEICRKDLLS
RNLNRMLKMFPGDYRIFPKTWLMPTDAYDVAIYANKHKRTFILKPYSAGQ
GRGIWITTDLRTVGKREKLICQTYIERPLLIDGYKFDLRVYTLVTSVDPL
RIFVYNEGLARFATQKYVPPTTGNSHNVFMHLTNYCLNRRNSQYMVGNGP
EAGSKRKLSAFNKWLVDHNYDVGEFWASVDDAIIKTLISAWPTLKHNYNV
CFPKHDKIQASFQLLGFDILVDWKLKPYILEVNHTPSLSADESVDMEVKR
PLIRDTLNMLSTALVDKEQIIRDDRTEHRARLLRNIYNKKAAAQMPGYSS
PIREVGGHDVRQACSIGALTQQIAWEESHLGNYRRIMPPRDSSKVNYYCK
FYEQNKQPMFADTVASRRREQLNLQAIQKHQRERQQDLIQQQQIHTQAQN
RMGKHVRWPGDLVQGEQVNPVILQSRRRREEAEAYAKKHRALIAREIQRQ
KEQLLAPTCAKERLGIWQSVRREKRSQFSPKRGSSITKAYRRKQQRNLSL
RARQQRMIEMEAQRDAKFLEQHAQKQRLEGGRKTGQSESPNLLSKITAKS
KTSLKKKMKPKGKPELKKETLQEGNHCQMTKSKVELTPGSKARAFANWTA
RTINEAETDQLLSWRKERANQLNETRLRELIFSKMYENGHLTKNDIKCFP
DLLYQILNNDCKEASSRASFLDH
BO34135.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16716-PC | 867 | CG16716-PC | 1..867 | 1..867 | 4587 | 100 | Plus |
| CG5987-PA | 720 | CG5987-PA | 147..628 | 132..601 | 1517 | 59.5 | Plus |
| CG31108-PB | 917 | CG31108-PB | 214..567 | 129..481 | 500 | 33.5 | Plus |
| CG31108-PA | 917 | CG31108-PA | 214..567 | 129..481 | 500 | 33.5 | Plus |
| CG16833-PM | 827 | CG16833-PM | 334..652 | 141..458 | 440 | 33.2 | Plus |
