Clone BO34138 Report

Search the DGRC for BO34138

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:341
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG33223-RA
Protein status:BO34138.pep: Imported from assembly
Sequenced Size:586

Clone Sequence Records

BO34138.complete Sequence

586 bp assembled on 2013-05-14

GenBank Submission: KX796076

> BO34138.complete
GAAGTTATCAGTCGACATGCGGAAGGTGCAGGCTTTGGTTCAGACGCGCG
ACGGCAAGAAGACCGTCTACGAGGTGGATCGCTTAGGAACGGTGGCCAGC
CTGAAGGCACGGATCGGGCAAGCCATGTCCGTGCCCATGGGCTTCAGTCG
GCTGTCGTACAAGGGTCGCGTGCTATCCAATCAGAGCGTACTGGAGGATT
TGGGGCCCAATAAGTCCACCCTGGATCTCACCTGGAAGCCGGTCGTCCTG
ACGGCCAATCAGAGCAGCAAGTTAAGCAAGTTCGGCTATGGCAGGATAGA
CGATAGTGAAGTTATGTTTACACTGATCGGCGGCTACCAGCAACGCGAAG
AATATCCTGGTGGCATAGTCAATCCACCGGACGACGAAAGTCAACAAAAC
TTCAACGCAGGTGACGATGATGATGCACTGGAGGCCCAGGACATGACTGG
ACACGATTTGTCCTCAATTCAAACCGATGATTTATCGCTCAAAGGCCAGA
CGGAACCGGAGCTGGATTGCTCCATTGGATCTCATGGATTCTCTGGATCT
CAAGAAGAAGGCCAAGAAGCAAGCTTTCTAGACCAT

BO34138.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG33223-RB 555 CG33223-PB 1..552 17..568 2760 100 Plus
CG33223-RA 555 CG33223-PA 1..552 17..568 2760 100 Plus
CG32713-RB 555 CG32713-PB 1..552 17..568 2625 98.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG33223-RB 689 CG33223-RB 67..618 17..568 2760 100 Plus
CG33223-RA 1114 CG33223-RA 492..1043 17..568 2760 100 Plus
CG32713-RB 796 CG32713-RB 73..624 17..568 2625 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8465761..8466312 568..17 2760 100 Minus
X 23542271 X 8457009..8457560 568..17 2625 98.4 Minus
X 23542271 X 13402370..13402714 346..17 810 84.2 Minus
Blast to na_te.dros performed on 2014-11-28 13:34:18 has no hits.

BO34138.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:50:12 Download gff for BO34138.complete
Subject Subject Range Query Range Percent Splice Strand
CG33223-RA 492..1043 17..570 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:41 Download gff for BO34138.complete
Subject Subject Range Query Range Percent Splice Strand
CG33223-RA 492..1043 17..570 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:56 Download gff for BO34138.complete
Subject Subject Range Query Range Percent Splice Strand
CG33223-RA 492..1043 17..570 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:56 Download gff for BO34138.complete
Subject Subject Range Query Range Percent Splice Strand
X 8465759..8466312 17..570 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:41 Download gff for BO34138.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8359792..8360345 17..570 99   Minus

BO34138.pep Sequence

Translation from 16 to 586

> BO34138.pep
MRKVQALVQTRDGKKTVYEVDRLGTVASLKARIGQAMSVPMGFSRLSYKG
RVLSNQSVLEDLGPNKSTLDLTWKPVVLTANQSSKLSKFGYGRIDDSEVM
FTLIGGYQQREEYPGGIVNPPDDESQQNFNAGDDDDALEAQDMTGHDLSS
IQTDDLSLKGQTEPELDCSIGSHGFSGSQEEGQEASFLDH

BO34138.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG33223-PB 184 CG33223-PB 1..184 1..184 945 100 Plus
CG33223-PA 184 CG33223-PA 1..184 1..184 945 100 Plus
CG32713-PB 184 CG32713-PB 1..184 1..184 923 97.3 Plus
CG32713-PA 184 CG32713-PA 1..184 1..184 923 97.3 Plus
CG12725-PA 163 CG12725-PA 1..162 1..178 461 60.3 Plus