Clone BO34140 Report

Search the DGRC for BO34140

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:341
Well:40
Vector:pDNR-Dual
Associated Gene/Transcripthubl-RA
Protein status:BO34140.pep: Imported from assembly
Sequenced Size:907

Clone Sequence Records

BO34140.complete Sequence

907 bp assembled on 2013-05-14

GenBank Submission: KX795608

> BO34140.complete
GAAGTTATCAGTCGACATGCTCAACTCTTTGGCCAAGAGAATTGTGCTTA
TGCCCAGCCTTATAGCACTGGAGGATACTTGTCGAACTATTCACGTTACC
GCCCTAATGGCGAGGATGGGAAAGGATTTCTGTCCCGTGAGTGAGGTTCC
CGACTGCAAAGTGGTGAAGAAGCGACCGTGCAGTCCCACGGATCCACCTG
TTCGTCCTTGCAGCGAGGAGGGCTGCACCCAGCCGCGATACTCATGTTGC
GTGAGTACCGGCATTTCGGCGAATCCATGCGCTGATCCAAGCAAGAAGAC
CAAGTTCGTTTCGATGTGGAAGAGATACAAGGATGATGGTAGTAATCGGC
CAGAAGCTATGTGGCACTACCCGGAGGAGTGCTGTCCAAAGTGTGAGGAT
ACGCGATTTGACGTTTTGTACTATACACCGTCGGACAAGTGCCGGGAGTT
CCAGCGCACCTGGTGGGAATGCTGTCCAAAAATGGTACCGAAGCGGGTCT
GCTGCTGGTGCGACGCCATTCCACCGGAGGTCCTGCGGCGAGATTTGCCC
ATCTGCCCGCGATCCGCTTGTCTCGCAGAACATGAGAGGAAGCGCTATAA
GTGCCTAAACAAAAGGTACAAAGGTTGCATGCGTATCCGTATGCCGTGTT
GTCGAACCGCTCGAATACCGCCCGACTGCAGGGCATTCCCCGGTCCTTCC
GATTGCGAGAAGATCAAGTGCCCGTTCCCGAGTTACTCCGAATGCGTTCA
GGAGGATCCCGCTGTTATCCCAACCCGGCCACCAGAGTGTGAGTGCTTGA
AAAAGGCGTCTCAGTGCGAGCAGATCCGACGAGGACGGCACATGGAAAAC
AACGACATAAGCATCTGGCCGTGTACTTCCAGGGGAAGAGCAAGCTTTCT
AGACCAT

BO34140.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
hubl-RB 876 CG30364-PB 1..873 17..889 4365 100 Plus
hubl-RA 876 CG30364-PA 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
spaw-RB 2691 CG30365-RB 57..930 16..889 4370 100 Plus
hubl-RB 2691 CG30364-RB 57..930 16..889 4370 100 Plus
hubl-RA 1061 CG30364-RA 57..930 16..889 4370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8361227..8362100 889..16 4370 100 Minus
Blast to na_te.dros performed on 2014-11-28 13:34:22 has no hits.

BO34140.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:50:14 Download gff for BO34140.complete
Subject Subject Range Query Range Percent Splice Strand
hubl-RA 58..930 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:43 Download gff for BO34140.complete
Subject Subject Range Query Range Percent Splice Strand
spaw-RB 58..930 17..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:58 Download gff for BO34140.complete
Subject Subject Range Query Range Percent Splice Strand
hubl-RA 58..930 17..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:58 Download gff for BO34140.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8361224..8362099 17..891 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:43 Download gff for BO34140.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4248729..4249604 17..891 99   Minus

BO34140.pep Sequence

Translation from 16 to 907

> BO34140.pep
MLNSLAKRIVLMPSLIALEDTCRTIHVTALMARMGKDFCPVSEVPDCKVV
KKRPCSPTDPPVRPCSEEGCTQPRYSCCVSTGISANPCADPSKKTKFVSM
WKRYKDDGSNRPEAMWHYPEECCPKCEDTRFDVLYYTPSDKCREFQRTWW
ECCPKMVPKRVCCWCDAIPPEVLRRDLPICPRSACLAEHERKRYKCLNKR
YKGCMRIRMPCCRTARIPPDCRAFPGPSDCEKIKCPFPSYSECVQEDPAV
IPTRPPECECLKKASQCEQIRRGRHMENNDISIWPCTSRGRASFLDH

BO34140.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
hubl-PB 291 CG30364-PB 1..291 1..291 1676 100 Plus
hubl-PA 291 CG30364-PA 1..291 1..291 1676 100 Plus
swif-PB 284 CG30366-PB 37..279 54..272 293 31 Plus
swif-PA 284 CG30366-PA 37..279 54..272 293 31 Plus
CG2127-PB 289 CG2127-PB 51..267 66..268 258 33.6 Plus